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Atf7
Gene Detail
Symbol

Name
ID
Atf7
activating transcription factor 7
MGI:2443472
Synonyms
1110012F10Rik, 9430065F09Rik, C130020M04Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 15
57.66 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:102525946-102625464 bp, - strand
From VEGA annotation of GRCm38

  99519 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4994  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ATF7
Protein SuperFamily: cyclic AMP-dependent transcription factor, CRE-BP1 type
Gene Tree: Atf7

Human
homologs
ATF7, activating transcription factor 7
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 11016
neXtProt AC: NX_P17544

Human Synonyms: ATFA

Human Chr (Location): 12q13; chr12:53507856-53626415 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Radiation induced(1) Targeted(5)
Genomic Mutations involving Atf7 (1)
Incidental mutations (data from CvDC )
 
Mice homozygous for one knock-out allele exhibit increased marble burying, increased startle response, and decreased prepulse inhibition.
 
Phenotype Images(2)
Interactions
Atf7 interacts with 220 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (61)    Tissues (52)    Images (10)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 53
RT-PCR 8
cDNA source data(20)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase atf7 ; ZFIN atf7a    NEW 
Molecular
reagents
All nucleic(22) cDNA(21) Primer pair(1)
Microarray probesets(7)
Other database
links
VEGA Gene Model OTTMUSG00000044910 (Evidence)
Ensembl Gene Model ENSMUSG00000099083 (Evidence)
Entrez Gene 223922 (Evidence)
DFCI TC1585914, TC1633747, TC1603412, TC1640583, TC1660527
DoTS DT.110813419, DT.101711111, DT.40150333, DT.110813402, DT.101266527, DT.101256796, DT.91363549, DT.91426892, DT.40151483, DT.91317565
NIA Mouse Gene Index U036699
Consensus CDS Project CCDS37230.1
International Mouse Phenotyping Consortium Status Atf7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044910 VEGA Gene Model | MGI Sequence Detail 99519 C57BL/6J ±  kb
transcript OTTMUST00000118034 VEGA | MGI Sequence Detail 7147 Not Applicable 
polypeptide OTTMUSP00000065924 VEGA | MGI Sequence Detail 483 Not Applicable 

For the selected sequences
All sequences(83) RefSeq(2)
Polymorphisms
SNPs within 2kb(115 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000004404 cyclic AMP-dependent transcription factor ATF-7
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)
Other
accession IDs
MGI:1915865, MGI:1924604, MGI:2146037

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory