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Smco3 Gene Detail
Summary
  • Symbol
    Smco3
  • Name
    single-pass membrane protein with coiled-coil domains 3
  • Synonyms
    C030030A07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443451
    NCBI Gene: 654818
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:136829931-136835450 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 66.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    206 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443451
protein coding gene Chr6:136829927-136835452 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031429
protein coding gene Chr6:141336082-141340263 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0031330
protein coding gene Chr6:139818190-139855907 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0031132
protein coding gene Chr6:139859346-139885071 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031872
protein coding gene Chr6:145171614-145177124 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0031092
protein coding gene Chr6:150562256-150564170 (-)
DBA/2J MGP_DBA2J_G0031249
protein coding gene Chr6:134574769-134590343 (-)
FVB/NJ MGP_FVBNJ_G0031200
protein coding gene Chr6:133477535-133504811 (-)
LP/J MGP_LPJ_G0031333
protein coding gene Chr6:141433172-141437798 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031240
protein coding gene Chr6:154480737-154492015 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031904
protein coding gene Chr6:139579350-139604077 (-)
PWK/PhJ MGP_PWKPhJ_G0030227
protein coding gene Chr6:133084453-133090128 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030051
protein coding gene Chr6:137863394-137864457 (-)
WSB/EiJ MGP_WSBEiJ_G0030593
protein coding gene Chr6:140221625-140238177 (-)



Homology
more
  • Human Ortholog
    SMCO3, single-pass membrane protein with coiled-coil domains 3
  • Vertebrate Orthologs
    12
  • Human Ortholog
    SMCO3, single-pass membrane protein with coiled-coil domains 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C12orf69
  • Links
    NCBI Gene ID: 440087
    neXtProt AC: NX_A2RU48
    UniProt: A2RU48

  • Chr Location
    12p12.3; chr12:14804650-14816761 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 654818 NCBI Gene Model | MGI Sequence Detail 5520 C57BL/6J ±  kb
transcript NM_001039558 RefSeq | MGI Sequence Detail 2052 C57BL/6  
polypeptide Q8BQM7 UniProt | EBI | MGI Sequence Detail 225 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR027895 Protein of unknown function DUF4533
    IPR040004 Single-pass membrane and coiled-coil domain-containing protein 3
Molecular
Reagents
less
  • All nucleic 8
    Genomic 1
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 19
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
05/14/2019
MGI 6.14
The Jackson Laboratory