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Scfd2 Gene Detail
Summary
  • Symbol
    Scfd2
  • Name
    Sec1 family domain containing 2
  • Synonyms
    E430013M20Rik, STXBP1L1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443446
    NCBI Gene: 212986
Location & Maps
more
  • Sequence Map
    Chr5:74204816-74531759 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      326944 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 39.44 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SCFD2, sec1 family domain containing 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SCFD2, sec1 family domain containing 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    STXBP1L1
  • Links
    NCBI Gene ID: 152579
    neXtProt AC: NX_Q8WU76
    UniProt: Q8WU76

  • Chr Location
    4q12; chr4:52872630-53366111 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 77411
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SCFD2
  • Gene Tree
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    237 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028569 VEGA Gene Model | MGI Sequence Detail 326944 C57BL/6J ±  kb
transcript OTTMUST00000070805 VEGA | MGI Sequence Detail 3672 Not Applicable  
polypeptide OTTMUSP00000036140 VEGA | MGI Sequence Detail 684 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    2669 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 5
References
more
  • Summaries
    All 257
    Diseases 1
    Gene Ontology 2
    Phenotypes 237
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:240882 Shiba E, et al., Ceramide-CD300f Binding Inhibits Lipopolysaccharide-induced Skin Inflammation. J Biol Chem. 2017 Feb 17;292(7):2924-2932

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/12/2017
MGI 6.10
The Jackson Laboratory