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Slco5a1 Gene Detail
Summary
  • Symbol
    Slco5a1
  • Name
    solute carrier organic anion transporter family, member 5A1
  • Synonyms
    A630033C23Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443431
    NCBI Gene: 240726
Location & Maps
more
  • Sequence Map
    Chr1:12866549-12992650 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      126102 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 3.71 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SLCO5A1, solute carrier organic anion transporter family member 5A1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLCO5A1, solute carrier organic anion transporter family member 5A1
    Orthology source: HomoloGene
  • Synonyms
    OATP5A1, OATPJ, OATP-J, OATPRP4, OATP-RP4, SLC21A15
  • Links
    NCBI Gene ID: 81796
    neXtProt AC: NX_Q9H2Y9

  • Chr Location
    8q13.3; chr8:69667046-69835064 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022327 VEGA Gene Model | MGI Sequence Detail 126102 C57BL/6J ±  kb
transcript OTTMUST00000053228 VEGA | MGI Sequence Detail 8463 Not Applicable  
polypeptide OTTMUSP00000025298 VEGA | MGI Sequence Detail 850 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1201 from dbSNP Build 142
Protein
Information
less
  • UniProt
    9 Sequences
  • InterPro Domains
    IPR002350 Kazal domain
    IPR020846 Major facilitator superfamily domain
    IPR004156 Organic anion transporter polypeptide OATP
Molecular
Reagents
less
  • All nucleic 41
    cDNA 40
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2138073
References
more
  • Summaries
    All 22
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory