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Fndc9 Gene Detail
Summary
  • Symbol
    Fndc9
  • Name
    fibronectin type III domain containing 9
  • Synonyms
    C030019I05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443410
    NCBI Gene: 320116
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:46126384-46130698 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 27.65 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    49 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443410
 protein coding gene Chr11:46126358-46130699 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018191
 protein coding gene Chr11:45143183-45147526 (+)
A/J MGP_AJ_G0018163
 protein coding gene Chr11:43413654-43417997 (+)
AKR/J MGP_AKRJ_G0018128
 protein coding gene Chr11:44651648-44655996 (+)
BALB/cJ MGP_BALBcJ_G0018132
 protein coding gene Chr11:43567690-43572033 (+)
C3H/HeJ MGP_C3HHeJ_G0017946
 protein coding gene Chr11:44699647-44703990 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018586
 protein coding gene Chr11:46480144-46484483 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016241
 protein coding gene Chr11:41388919-41393245 (+)
CAST/EiJ MGP_CASTEiJ_G0017509
 protein coding gene Chr11:44825955-44830281 (+)
CBA/J MGP_CBAJ_G0017918
 protein coding gene Chr11:48663123-48667465 (+)
DBA/2J MGP_DBA2J_G0018028
 protein coding gene Chr11:43154799-43159142 (+)
FVB/NJ MGP_FVBNJ_G0018022
 protein coding gene Chr11:42833032-42837374 (+)
LP/J MGP_LPJ_G0018100
 protein coding gene Chr11:45388428-45392770 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018046
 protein coding gene Chr11:50190500-50194845 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018625
 protein coding gene Chr11:44818602-44822938 (+)
PWK/PhJ MGP_PWKPhJ_G0017289
 protein coding gene Chr11:43242206-43246536 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017082
 protein coding gene Chr11:44624832-44629165 (+)
WSB/EiJ MGP_WSBEiJ_G0017559
 protein coding gene Chr11:44518939-44523284 (+)



Homology
more
  • Human Ortholog
    FNDC9, fibronectin type III domain containing 9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FNDC9, fibronectin type III domain containing 9
  • Synonyms
    C5orf40
  • Links
    NCBI Gene ID: 408263
    neXtProt AC: NX_Q8TBE3
    UniProt: Q8TBE3

  • Chr Location
    5q33.3; chr5:157341598-157345677 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 320116 NCBI Gene Model | MGI Sequence Detail 4315 C57BL/6J ±  kb
    transcript NM_177075 RefSeq | MGI Sequence Detail 2263 C57BL/6  
    polypeptide Q8BJN4 UniProt | EBI | MGI Sequence Detail 226 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 5
      cDNA 5

      Microarray probesets 2
    References
    more
    • Summaries
      All 24
      Gene Ontology 1
      Phenotypes 8
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory