B230354K17Rik MGI Mouse Gene Detail - MGI:2443272

Symbol

B230354K17Rik
Name

RIKEN cDNA B230354K17 gene

Feature Type

lncRNA gene
IDs

MGI:2443272
NCBI Gene: 105246278
Alliance

genome feature page
Transcription Start Sites

2 TSS

Sequence Map

Chr17:45744757-45753470 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 17, 22.42 cM
Mapping Data

1 experiment

SNPs within 2kb

288 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443272	lncRNA gene	Chr17:45744266-45775796 (+)
129S1/SvImJ	ENSMUSG00200028154	lncRNA gene	Chr17:40952461-40961407 (+)
129S1/SvImJ	ENSMUSG00200024578	protein coding gene	Chr17:40952492-40962373 (+)
A/J	ENSMUSG00195021970	lncRNA gene	Chr17:42449509-42458455 (+)
A/J	ENSMUSG00195017868	protein coding gene	Chr17:42449540-42459421 (+)
AKR/J	ENSMUSG00220036587	lncRNA gene	Chr17:41421411-41430352 (+)
AKR/J	ENSMUSG00220029251	protein coding gene	Chr17:41421442-41431318 (+)
BALB/cJ	ENSMUSG00180026575	lncRNA gene	Chr17:42188142-42197083 (+)
BALB/cJ	ENSMUSG00180021257	protein coding gene	Chr17:42188173-42198049 (+)
C3H/HeJ	ENSMUSG00175015626	protein coding gene	Chr17:41502240-41512116 (+)
C3H/HeJ	ENSMUSG00175016170	lncRNA gene	Chr17:41502209-41511150 (+)
C57BL/6NJ	ENSMUSG00215020533	protein coding gene	Chr17:41066688-41076569 (+)
C57BL/6NJ	ENSMUSG00215037661	lncRNA gene	Chr17:41066657-41075603 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005214	lincRNA gene	Chr17:42131467-42140711 (+)
CAST/EiJ	ENSTCUG00005026247	lncRNA gene	Chr17:42244908-42253839 (+)
CBA/J	ENSMUSG00210039330	lncRNA gene	Chr17:41251909-41260850 (+)
CBA/J	ENSMUSG00210035824	protein coding gene	Chr17:41251940-41261816 (+)
DBA/2J	ENSMUSG00185028971	protein coding gene	Chr17:44168843-44178724 (+)
DBA/2J	ENSMUSG00185030886	lncRNA gene	Chr17:44168812-44177758 (+)
FVB/NJ	ENSMUSG00205052087	protein coding gene	Chr17:41741584-41751462 (+)
FVB/NJ	ENSMUSG00205052657	lncRNA gene	Chr17:41741553-41750496 (+)
JF1/MsJ	ENSUMUG00000040257	lncRNA gene	Chr17:43778895-43787866 (+)
LP/J	ENSMUSG00230041898	lncRNA gene	Chr17:45054395-45063341 (+)
LP/J	ENSMUSG00230038108	protein coding gene	Chr17:45054426-45064307 (+)
NOD/ShiLtJ	ENSMUSG00190017706	lncRNA gene	Chr17:41140705-41149651 (+)
NOD/ShiLtJ	ENSMUSG00190016799	protein coding gene	Chr17:41140736-41150617 (+)
NZO/HlLtJ	ENSMUSG00225044288	lncRNA gene	Chr17:47312082-47321032 (+)
NZO/HlLtJ	ENSMUSG00225043338	protein coding gene	Chr17:47312113-47321998 (+)
PWK/PhJ	ENSLUMG00010035638	lncRNA gene	Chr17:41012835-41021804 (+)
SPRET/EiJ	ENSMSPG00010037260	lncRNA gene	Chr17:41239865-41248771 (+)
WSB/EiJ	ENSIUOG00005028577	lncRNA gene	Chr17:42113445-42122391 (+)

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Gene Tree

B230354K17Rik

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

663
Tissues

13
cDNA Data

19
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

65
RefSeq

2
UniProt

1

Ensembl

ENSMUSG00000097119 (Evidence)
NCBI Gene

105246278

			Length	Strain/Species	Flank
genomic	105246278	NCBI Gene Model \| MGI Sequence Detail	8714	C57BL/6J	± kb
transcript	NR_130960	RefSeq \| MGI Sequence Detail	4918	C57BL/6
polypeptide	Q8BNK1	UniProt \| EBI \| MGI Sequence Detail	210	Not Applicable

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UniProt

1 Sequence
InterPro Domains

IPR053270 Friend virus susceptibility protein 1

IPR063295 Fv1, N-terminal region

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All nucleic 19

cDNA 19

Microarray probesets 4

Summaries

All 16

Developmental Gene Expression 1
Earliest

J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for B230354K17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144770	Chr17:45744513-45744538 (+)	-231 bp
Tssr144771	Chr17:45744749-45744794 (+)	15 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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