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Tmem260 Gene Detail
Summary
  • Symbol
    Tmem260
  • Name
    transmembrane protein 260
  • Synonyms
    6720456H20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443219
    NCBI Gene: 218989
  • Gene Overview
    MyGene.info: TMEM260
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:48683581-48761703 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 25.06 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    741 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443219
 protein coding gene Chr14:48683580-48797640 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021226
 protein coding gene Chr14:42288618-42362161 (+)
A/J MGP_AJ_G0021175
 protein coding gene Chr14:40969527-41039295 (+)
AKR/J MGP_AKRJ_G0021153
 protein coding gene Chr14:42572125-42640447 (+)
BALB/cJ MGP_BALBcJ_G0021178
 protein coding gene Chr14:41026118-41095912 (+)
C3H/HeJ MGP_C3HHeJ_G0020961
 protein coding gene Chr14:42355732-42426543 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021613
 protein coding gene Chr14:44048746-44117236 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019172
 protein coding gene Chr14:40301896-40369871 (+)
CAST/EiJ MGP_CASTEiJ_G0020487
 protein coding gene Chr14:39496058-39562970 (+)
CBA/J MGP_CBAJ_G0020928
 protein coding gene Chr14:45466791-45539003 (+)
DBA/2J MGP_DBA2J_G0021051
 protein coding gene Chr14:40854926-40923456 (+)
FVB/NJ MGP_FVBNJ_G0021036
 protein coding gene Chr14:40599681-40668406 (+)
LP/J MGP_LPJ_G0021120
 protein coding gene Chr14:42538036-42608207 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0021061
 protein coding gene Chr14:44783315-44854261 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021646
 protein coding gene Chr14:42113647-42183075 (+)
PWK/PhJ MGP_PWKPhJ_G0020235
 protein coding gene Chr14:37744453-37816096 (+)
SPRET/EiJ MGP_SPRETEiJ_G0020060
 protein coding gene Chr14:38246393-38314767 (+)
WSB/EiJ MGP_WSBEiJ_G0020543
 protein coding gene Chr14:42214278-42285560 (+)



Homology
more
  • Human Ortholog
    TMEM260, transmembrane protein 260
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM260, transmembrane protein 260
  • Synonyms
    C14orf101, SHDRA
  • Links
    NCBI Gene ID: 54916
    neXtProt AC: NX_Q9NX78
    UniProt: Q9NX78

  • Chr Location
    14q22.3; chr14:56579791-56660629 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    54
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000036339 Ensembl Gene Model | MGI Sequence Detail 78123 C57BL/6J ±  kb
    transcript ENSMUST00000226422 Ensembl | MGI Sequence Detail 6333 Not Applicable  
    polypeptide ENSMUSP00000154083 Ensembl | MGI Sequence Detail 712 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      6 Sequences
    • InterPro Domains
      IPR021280 Protein of unknown function DUF2723
    Molecular
    Reagents
    less
    • All nucleic 54
      cDNA 54

      Microarray probesets 2
    References
    more
    • Summaries
      All 24
      Gene Ontology 1
      Phenotypes 6
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer & Copyright Notice
    Send questions and comments to User Support.     		last database update
    06/08/2021
    MGI 6.17     		The Jackson Laboratory