A330008L17Rik Gene Detail

Summary

• Symbol
  A330008L17Rik
• Name
  RIKEN cDNA A330008L17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443215
  NCBI Gene: 234624
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:100143306-100460070 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 49.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9726 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443215	lncRNA gene	Chr8:100142428-100460070 (+)
129S1/SvImJ	ENSMUSG00200015276	lncRNA gene	Chr8:94533009-94767598 (+)
129S1/SvImJ	ENSMUSG00200013942	protein coding gene	Chr8:94532005-94564014 (+)
A/J	ENSMUSG00195004174	lncRNA gene	Chr8:94837582-95147318 (+)
AKR/J	ENSMUSG00220012005	lncRNA gene	Chr8:94897633-95207341 (+)
BALB/cJ	ENSMUSG00180003729	protein coding gene	Chr8:94751425-94783435 (+)
BALB/cJ	ENSMUSG00180004313	lncRNA gene	Chr8:94752429-95069595 (+)
C3H/HeJ	ENSMUSG00175002685	protein coding gene	Chr8:94833543-94865549 (+)
C3H/HeJ	ENSMUSG00175002809	lncRNA gene	Chr8:94834547-95151733 (+)
C57BL/6NJ	ENSMUSG00215001156	protein coding gene	Chr8:94415477-94447489 (+)
C57BL/6NJ	ENSMUSG00215001343	lncRNA gene	Chr8:94416481-94737109 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006712	lincRNA gene	Chr8:90869207-91177589 (+)
CAST/EiJ	ENSTCUG00005024260	lncRNA gene	Chr8:94227195-94548118 (+)
CBA/J	ENSMUSG00210015432	lncRNA gene	Chr8:94763463-95080642 (+)
CBA/J	ENSMUSG00210014996	protein coding gene	Chr8:94762459-94794466 (+)
DBA/2J	ENSMUSG00185022644	protein coding gene	Chr8:100871400-100903415 (+)
DBA/2J	ENSMUSG00185024602	lncRNA gene	Chr8:100872404-101189585 (+)
FVB/NJ	ENSMUSG00205017515	lncRNA gene	Chr8:93823115-94132661 (+)
JF1/MsJ	ENSUMUG00000016746	lncRNA gene	Chr8:103205286-103522482 (+)
LP/J	ENSMUSG00230008693	lncRNA gene	Chr8:104491976-104812716 (+)
NOD/ShiLtJ	ENSMUSG00190012329	protein coding gene	Chr8:94888851-94920861 (+)
NOD/ShiLtJ	ENSMUSG00190013932	lncRNA gene	Chr8:94889855-95207023 (+)
NZO/HlLtJ	ENSMUSG00225009926	protein coding gene	Chr8:107901410-107933412 (+)
NZO/HlLtJ	ENSMUSG00225011851	lncRNA gene	Chr8:107902414-108219569 (+)
PWK/PhJ	ENSLUMG00010004350	lncRNA gene	Chr8:94693154-95015596 (+)
SPRET/EiJ	ENSMSPG00010006625	lncRNA gene	Chr8:96758140-96767005 (+)
WSB/EiJ	ENSIUOG00005006086	lncRNA gene	Chr8:95546800-95859944 (+)

Homology

• Gene Tree
  A330008L17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  1
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  8 strains or lines available

Expression

• Assay Results
  604
• Tissues
  2
• cDNA Data
  3
• Literature Summary
  3

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000052479 (Evidence)
• NCBI Gene
  234624

Representative Sequences			Length	Strain/Species
genomic	234624	NCBI Gene Model | MGI Sequence Detail	316765	C57BL/6J
transcript	NR_132435	RefSeq | MGI Sequence Detail	2614	C57BL/6
polypeptide	Q8BHM4	UniProt | EBI | MGI Sequence Detail	157	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Developmental Gene Expression 3

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for A330008L17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79014	Chr8:100143217-100143231 (+)	-82 bp