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Sidt1 Gene Detail
Summary
  • Symbol
    Sidt1
  • Name
    SID1 transmembrane family, member 1
  • Synonyms
    B830021E24Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443155
    NCBI Gene: 320007
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:44240180-44333196 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 28.57 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    635 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443155
 protein coding gene Chr16:44240177-44333212 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022837
 protein coding gene Chr16:42983950-43082543 (-)
A/J MGP_AJ_G0022802
 protein coding gene Chr16:41042510-41139269 (-)
AKR/J MGP_AKRJ_G0022774
 protein coding gene Chr16:42353622-42455173 (-)
BALB/cJ MGP_BALBcJ_G0022803
 protein coding gene Chr16:41028639-41124919 (-)
C3H/HeJ MGP_C3HHeJ_G0022567
 protein coding gene Chr16:42551903-42652955 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023250
 protein coding gene Chr16:43970346-44067888 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020765
 protein coding gene Chr16:41091259-41182295 (-)
CAST/EiJ MGP_CASTEiJ_G0022093
 protein coding gene Chr16:42753528-42853739 (-)
CBA/J MGP_CBAJ_G0022538
 protein coding gene Chr16:45823556-45934153 (-)
DBA/2J MGP_DBA2J_G0022670
 protein coding gene Chr16:40785458-40877811 (-)
FVB/NJ MGP_FVBNJ_G0022645
 protein coding gene Chr16:40742678-40835769 (-)
LP/J MGP_LPJ_G0022738
 protein coding gene Chr16:42693136-42794769 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022664
 protein coding gene Chr16:45218341-45319443 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023265
 protein coding gene Chr16:42383890-42485583 (-)
PWK/PhJ MGP_PWKPhJ_G0021833
 protein coding gene Chr16:41171014-41266042 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021664
 protein coding gene Chr16:42280582-42381503 (-)
WSB/EiJ MGP_WSBEiJ_G0022137
 protein coding gene Chr16:42476125-42578290 (-)



Homology
more
  • Human Ortholog
    SIDT1, SID1 transmembrane family member 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SIDT1, SID1 transmembrane family member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SID1, SID-1
  • Links
    NCBI Gene ID: 54847
    neXtProt AC: NX_Q9NXL6
    UniProt: Q9NXL6

  • Chr Location
    3q13.2; chr3:113531774-113629579 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    39
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000022696 Ensembl Gene Model | MGI Sequence Detail 93017 C57BL/6J ±  kb
    transcript ENSMUST00000047446 Ensembl | MGI Sequence Detail 4279 Not Applicable  
    polypeptide ENSMUSP00000038433 Ensembl | MGI Sequence Detail 832 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 39
      cDNA 39

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2146609
    References
    more
    • Summaries
      All 31
      Gene Ontology 5
      Phenotypes 9
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:276651 Nguyen TA, et al., SIDT1 Localizes to Endolysosomes and Mediates Double-Stranded RNA Transport into the Cytoplasm. J Immunol. 2019 Jun 15;202(12):3483-3492
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    02/23/2021
    MGI 6.16     		The Jackson Laboratory