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Wdr3
Gene Detail
Symbol

Name
ID
Wdr3
WD repeat domain 3
MGI:2443143
Synonyms
D030020G18Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 3
43.46 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:100138180-100162407 bp, - strand
From VEGA annotation of GRCm38

  24228 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4937  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: WDR3
Gene Tree: Wdr3

Human
homologs
WDR3, WD repeat domain 3
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 10885
neXtProt AC: NX_Q9UNX4

Human Synonyms: DIP2, UTP12

Human Chr (Location): 1p12; chr1:117929749-117960426 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(9) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Wdr3 interacts with 339 markers (Mir1b, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (3)    Tissues (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 3
cDNA source data(7)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase wdr3    NEW 
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000006955 (Evidence)
Ensembl Gene Model ENSMUSG00000033285 (Evidence)
Entrez Gene 269470 (Evidence)
DFCI TC1575727, TC1599537
NIA Mouse Gene Index U024425
Consensus CDS Project CCDS17674.1
International Mouse Phenotyping Consortium Status Wdr3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006955 VEGA Gene Model | MGI Sequence Detail 24228 C57BL/6J ±  kb
transcript OTTMUST00000016099 VEGA | MGI Sequence Detail 3432 Not Applicable 
polypeptide OTTMUSP00000007383 VEGA | MGI Sequence Detail 942 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(234 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR020472 G-protein beta WD-40 repeat
InterPro IPR007148 Small-subunit processome, Utp12
InterPro IPR001680 WD40 repeat
InterPro IPR019775 WD40 repeat, conserved site
InterPro IPR017986 WD40-repeat-containing domain
InterPro IPR015943 WD40/YVTN repeat-like-containing domain
Protein Ontology PR:000029860 WD repeat-containing protein 3
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)
Other
accession IDs
MGI:2139997

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory