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Cpne9 Gene Detail
Summary
  • Symbol
    Cpne9
  • Name
    copine family member IX
  • Synonyms
    A730016F12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443052
    NCBI Gene: 211232
  • Alliance
    genome feature page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:113259244-113282532 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 52.75 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    600 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443052
 protein coding gene Chr6:113259244-113282588 (+)
129S1/SvImJ ENSMUSG00200024972
 protein coding gene Chr6:110309006-110332268 (+)
A/J ENSMUSG00195014792
 protein coding gene Chr6:109981439-110004710 (+)
AKR/J ENSMUSG00220032121
 protein coding gene Chr6:108904780-108927926 (+)
BALB/cJ ENSMUSG00180002191
 protein coding gene Chr6:110346165-110369427 (+)
C3H/HeJ ENSMUSG00175027408
 protein coding gene Chr6:67039118-67062265 (-)
C57BL/6NJ ENSMUSG00215014056
 protein coding gene Chr6:110340632-110363894 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028718
 protein coding gene Chr6:108361259-108386058 (+)
CAST/EiJ ENSTCUG00005028414
 protein coding gene Chr6:110148797-110172159 (+)
CBA/J ENSMUSG00210019908
 protein coding gene Chr6:110164697-110187843 (+)
DBA/2J ENSMUSG00185017273
 protein coding gene Chr6:110538608-110561876 (+)
FVB/NJ ENSMUSG00205023499
 protein coding gene Chr6:109238581-109261661 (+)
JF1/MsJ ENSUMUG00000011843
 protein coding gene Chr6:109269543-109292743 (+)
LP/J ENSMUSG00230045269
 protein coding gene Chr6:111810332-111833594 (+)
NOD/ShiLtJ ENSMUSG00190017068
 protein coding gene Chr6:109737384-109760458 (+)
NZO/HlLtJ ENSMUSG00225044477
 protein coding gene Chr6:113752883-113776155 (+)
PWK/PhJ ENSLUMG00010024398
 protein coding gene Chr6:108763599-108786878 (+)
SPRET/EiJ ENSMSPG00010033350
 protein coding gene Chr6:111533155-111556185 (+)
WSB/EiJ ENSIUOG00005022433
 protein coding gene Chr6:110491675-110514936 (+)



Homology
more
  • Human Ortholog
    CPNE9, copine family member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CPNE9, copine family member 9
  • Links
    NCBI Gene ID: 151835
    UniProt: Q8IYJ1

  • Chr Location
    3p25.3; chr3:9703691-9729908 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    12
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 211232 NCBI Gene Model | MGI Sequence Detail 23289 C57BL/6J ±  kb
transcript NM_170673 RefSeq | MGI Sequence Detail 2779 C57BL/6  
polypeptide Q1RLL3 UniProt | EBI | MGI Sequence Detail 553 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 2
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 12
  • Earliest
    J:86882 Creutz CE, et al., The copines, a novel class of C2 domain-containing, calcium-dependent, phospholipid-binding proteins conserved from Paramecium to humans. J Biol Chem. 1998 Jan 16;273(3):1393-402
  • Latest
    J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory