A730017C20Rik Gene Detail

Summary

• Symbol
  A730017C20Rik
• Name
  RIKEN cDNA A730017C20 gene

• Feature Type
  protein coding gene
• IDs
  MGI:2442934
  NCBI Gene: 225583
• Alliance
  gene page

Location & Maps

• Sequence Map
  Chr18:59062248-59076962 bp, + strand
• From VEGA annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    14715 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 33.90 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  KIAA1024L, KIAA1024 like

• Vertebrate Orthologs
  10

• Human Ortholog
  KIAA1024L, KIAA1024 like
  Orthology source: HomoloGene, HGNC
• Links
  HGNC:33914

  NCBI Gene ID: 100127206

  neXtProt AC: NX_P59773

  UniProt: P59773

  
  
• Chr Location
  5q23.3; chr5:129748191-129765063 (+)  GRCh38.p7

---

• HomoloGene
  Vertebrate Homology Class 18350
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: KIAA1024L
• Gene Tree
  A730017C20Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotypes from 1 allele in 1 genetic background
  7 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  5
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

• External Resources
  FuncBase

Expression

• cDNA Data
  44

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Interactions

• A730017C20Rik interacts with 206 markers (Mir1a-1, Mir1a-2, Mir9-1, ...) View All

Sequences &
Gene Models

• All Sequences
  56
• RefSeq
  10
• UniProt
  5
• CCDS
  CCDS29267.2
• UniGene
  209711

• VEGA
  OTTMUSG00000028219 (Evidence)
• Ensembl
  ENSMUSG00000050875 (Evidence)
• NCBI Gene
  225583

Representative Sequences			Length	Strain/Species
genomic	OTTMUSG00000028219	VEGA Gene Model | MGI Sequence Detail	14715	C57BL/6J
transcript	OTTMUST00000111043	VEGA | MGI Sequence Detail	1911	Not Applicable
polypeptide	OTTMUSP00000062061	VEGA | MGI Sequence Detail	193	Not Applicable

Polymorphisms

• SNPs within 2kb
  185 from dbSNP Build 142

Protein
Information

• UniProt
  5 Sequences
• InterPro Domains
  IPR009626 Uncharacterised protein family UPF0258

Molecular
Reagents

• All nucleic 44

  cDNA 44

  
  

  Microarray probesets 5

References

• Summaries
  All 25

  Gene Ontology 1

  Phenotypes 7
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514