E330017L17Rik Gene Detail

Summary

• Symbol
  E330017L17Rik
• Name
  RIKEN cDNA E330017L17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442924
  NCBI Gene: 319894
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:129800019-129802789 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 63.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442924	lncRNA gene	Chr4:129799794-129813580 (+)
129S1/SvImJ	ENSMUSG00200021432	lncRNA gene	Chr4:123241230-123254538 (+)
A/J	ENSMUSG00195045957	lncRNA gene	Chr4:124574497-124587821 (+)
AKR/J	ENSMUSG00220048584	lncRNA gene	Chr4:123566265-123579591 (+)
BALB/cJ	ENSMUSG00180050082	lncRNA gene	Chr4:122208188-122221516 (+)
C3H/HeJ	ENSMUSG00175048540	lncRNA gene	Chr4:123220760-123234086 (+)
C57BL/6NJ	ENSMUSG00215052697	lncRNA gene	Chr4:124724325-124737922 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005928	lincRNA gene	Chr4:119717230-119730543 (+)
CAST/EiJ	ENSTCUG00005048068	lncRNA gene	Chr4:124103806-124117195 (+)
CBA/J	ENSMUSG00210053929	lncRNA gene	Chr4:122849764-122863086 (+)
DBA/2J	ENSMUSG00185052709	lncRNA gene	Chr4:124382123-124395445 (+)
FVB/NJ	ENSMUSG00205048909	lncRNA gene	Chr4:122609315-122622639 (+)
JF1/MsJ	ENSUMUG00000046673	lncRNA gene	Chr4:125034775-125048360 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050212	lncRNA gene	Chr4:122614597-122627927 (+)
NZO/HlLtJ	ENSMUSG00225026744	lncRNA gene	Chr4:134093020-134106346 (+)
PWK/PhJ	ENSLUMG00010049775	lncRNA gene	Chr4:122065641-122079092 (+)
SPRET/EiJ	ENSMSPG00010045425	lncRNA gene	Chr4:124135875-124149484 (+)
WSB/EiJ	ENSIUOG00005046448	lncRNA gene	Chr4:122476484-122489793 (+)

Homology

• Gene Tree
  E330017L17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving E330017L17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000086369 (Evidence)
• NCBI Gene
  319894

Representative Sequences			Length	Strain/Species
genomic	319894	NCBI Gene Model | MGI Sequence Detail	2771	C57BL/6J
transcript	NR_045190	RefSeq | MGI Sequence Detail	830	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for E330017L17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39206	Chr4:129799985-129799996 (+)	-28 bp
Tssr39207	Chr4:129799998-129800037 (+)	-1 bp