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Fam171a1 Gene Detail
Summary
  • Symbol
    Fam171a1
  • Name
    family with sequence similarity 171, member A1
  • Synonyms
    9630050M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442917
    NCBI Gene: 269233
Location & Maps
more
  • Sequence Map
    Chr2:3114224-3227806 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      113583 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 1.73 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C10orf38
  • Links
    NCBI Gene ID: 221061
    neXtProt AC: NX_Q5VUB5
    UniProt: Q5VUB5

  • Chr Location
    10p13; chr10:15211643-15374532 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    17
  • Tissues
    4
  • cDNA Data
    52
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000010785 VEGA Gene Model | MGI Sequence Detail 113583 C57BL/6J ±  kb
transcript OTTMUST00000025226 VEGA | MGI Sequence Detail 4149 Not Applicable  
polypeptide OTTMUSP00000011575 VEGA | MGI Sequence Detail 892 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    480 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR013783 Immunoglobulin-like fold
    IPR018890 Uncharacterised protein family FAM171
Molecular
Reagents
less
  • All nucleic 52
    cDNA 52

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138771
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/20/2017
MGI 6.10 		The Jackson Laboratory