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Fam171a1 Gene Detail
Summary
  • Symbol
    Fam171a1
  • Name
    family with sequence similarity 171, member A1
  • Synonyms
    9630050M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442917
    NCBI Gene: 269233
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:3115261-3228843 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 2, 1.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    480 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442917
protein coding gene Chr2:3115261-3228843 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025302
protein coding gene Chr2:58999-179984 (+)
A/J MGP_AJ_G0025278
protein coding gene Chr2:66739-180676 (+)
AKR/J MGP_AKRJ_G0025247
protein coding gene Chr2:64322-171776 (+)
BALB/cJ MGP_BALBcJ_G0025274
protein coding gene Chr2:55819-164237 (+)
C3H/HeJ MGP_C3HHeJ_G0025034
protein coding gene Chr2:73603-190248 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025717
protein coding gene Chr2:59424-178972 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023131
protein coding gene Chr2:20599-136699 (+)
CAST/EiJ MGP_CASTEiJ_G0024498
protein coding gene Chr2:60291-181439 (+)
CBA/J MGP_CBAJ_G0025014
protein coding gene Chr2:69484-192243 (+)
DBA/2J MGP_DBA2J_G0025145
protein coding gene Chr2:55871-168904 (+)
FVB/NJ MGP_FVBNJ_G0025107
protein coding gene Chr2:68116-181910 (+)
LP/J MGP_LPJ_G0025232
protein coding gene Chr2:67882-199502 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025140
protein coding gene Chr2:64783-186466 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025775
protein coding gene Chr2:64367-188336 (+)
PWK/PhJ MGP_PWKPhJ_G0024247
protein coding gene Chr2:34325-154274 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024049
protein coding gene Chr2:66780-190448 (+)
WSB/EiJ MGP_WSBEiJ_G0024568
protein coding gene Chr2:67881-185311 (+)



Homology
more
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
  • Synonyms
    APCN, C10orf38
  • Links
    NCBI Gene ID: 221061
    neXtProt AC: NX_Q5VUB5
    UniProt: Q5VUB5

  • Chr Location
    10p13; chr10:15211643-15374554 (-)  GRCh38

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    36 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 269233 NCBI Gene Model | MGI Sequence Detail 113583 C57BL/6J ±  kb
    transcript NM_001081161 RefSeq | MGI Sequence Detail 4149 C57BL/6  
    polypeptide NP_001074630 RefSeq | MGI Sequence Detail 892 C57BL/6  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 53
      cDNA 53

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2138771
    References
    more
    • Summaries
      All 58
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 2
      Phenotypes 36
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:321576 Colombo S, et al., Stabilization of beta-catenin promotes melanocyte specification at the expense of the Schwann cell lineage. Development. 2022 Jan 15;149(2):dev194407

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    last database update
    03/12/2024
    MGI 6.23
    The Jackson Laboratory