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Fam171a1 Gene Detail
Summary
  • Symbol
    Fam171a1
  • Name
    family with sequence similarity 171, member A1
  • Synonyms
    9630050M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442917
    NCBI Gene: 269233
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:3114224-3227806 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 1.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    480 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442917
 protein coding gene Chr2:3114224-3227806 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025302
 protein coding gene Chr2:58999-179984 (+)
A/J MGP_AJ_G0025278
 protein coding gene Chr2:66739-180676 (+)
AKR/J MGP_AKRJ_G0025247
 protein coding gene Chr2:64322-171776 (+)
BALB/cJ MGP_BALBcJ_G0025274
 protein coding gene Chr2:55819-164237 (+)
C3H/HeJ MGP_C3HHeJ_G0025034
 protein coding gene Chr2:73603-190248 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025717
 protein coding gene Chr2:59424-178972 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023131
 protein coding gene Chr2:20599-136699 (+)
CAST/EiJ MGP_CASTEiJ_G0024498
 protein coding gene Chr2:60291-181439 (+)
CBA/J MGP_CBAJ_G0025014
 protein coding gene Chr2:69484-192243 (+)
DBA/2J MGP_DBA2J_G0025145
 protein coding gene Chr2:55871-168904 (+)
FVB/NJ MGP_FVBNJ_G0025107
 protein coding gene Chr2:68116-181910 (+)
LP/J MGP_LPJ_G0025232
 protein coding gene Chr2:67882-199502 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025140
 protein coding gene Chr2:64783-186466 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025775
 protein coding gene Chr2:64367-188336 (+)
PWK/PhJ MGP_PWKPhJ_G0024247
 protein coding gene Chr2:34325-154274 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024049
 protein coding gene Chr2:66780-190448 (+)
WSB/EiJ MGP_WSBEiJ_G0024568
 protein coding gene Chr2:67881-185311 (+)



Homology
more
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    FAM171A1, family with sequence similarity 171 member A1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    APCN, C10orf38
  • Links
    NCBI Gene ID: 221061
    neXtProt AC: NX_Q5VUB5
    UniProt: Q5VUB5

  • Chr Location
    10p13; chr10:15211643-15374532 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    648
  • Tissues
    4
  • cDNA Data
    53
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 269233 NCBI Gene Model | MGI Sequence Detail 113583 C57BL/6J ±  kb
transcript NM_001081161 RefSeq | MGI Sequence Detail 4149 C57BL/6  
polypeptide NP_001074630 RefSeq | MGI Sequence Detail 892 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR018890 Uncharacterised protein family FAM171
Molecular
Reagents
less
  • All nucleic 53
    cDNA 53

    Microarray probesets 4
Other
Accession IDs
less
MGI:2138771
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/10/2020
MGI 6.16 		The Jackson Laboratory