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Rab39 Gene Detail
Summary
  • Symbol
    Rab39
  • Name
    RAB39, member RAS oncogene family
  • Synonyms
    C230094F14Rik, Rab39a
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442855
    NCBI Gene: 270160
Location & Maps
more
  • Sequence Map
    Chr9:53684110-53706232 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      22123 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 29.12 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    RAB39A, RAB39A, member RAS oncogene family
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RAB39A, RAB39A, member RAS oncogene family
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RAB39
  • Links
    NCBI Gene ID: 54734
    neXtProt AC: NX_Q14964

  • Chr Location
    11q22.3; chr11:107928475-107963482 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030703 VEGA Gene Model | MGI Sequence Detail 22123 C57BL/6J ±  kb
transcript OTTMUST00000076017 VEGA | MGI Sequence Detail 2971 Not Applicable  
polypeptide OTTMUSP00000039946 VEGA | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    55 from dbSNP Build 142
Protein
Information
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  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000013615 ras-related protein Rab-39A
  • InterPro Domains
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
    IPR001806 Small GTPase superfamily
    IPR005225 Small GTP-binding protein domain
Molecular
Reagents
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  • All nucleic 10
    cDNA 10

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:225172 Seto S, et al., Rab39a interacts with phosphatidylinositol 3-kinase and negatively regulates autophagy induced by lipopolysaccharide stimulation in macrophages. PLoS One. 2013;8(12):e83324

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/13/2016
MGI 6.05
The Jackson Laboratory