Rab39
Gene Detail

Symbol Name ID

Rab39 RAB39, member RAS oncogene family MGI:2442855

Synonyms

C230094F14Rik, Rab39a

Feature Type

protein coding gene

Genetic Map

Chromosome 9

29.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr9:53684110-53706232 bp, - strand From VEGA annotation of GRCm38   22123 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:56773  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab39

Human homologs

Human Homolog		RAB39A, RAB39A, member RAS oncogene family
NCBI Gene ID		54734
neXtProt AC		NX_Q14964
Human Synonyms		RAB39
Human Chr (Location)		11q22.3; chr11:107799277-107834208 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(14) : Targeted(2) Gene trapped(12)

Gene Ontology (GO) classifications

All GO classifications: (12 annotations)

Process	phagosome acidification, phagosome-lysosome fusion, ...
Component	membrane, phagocytic vesicle, ...
Function	GTP binding, nucleotide binding

External Resources: FuncBase

Expression

Literature Summary: (1 records)
cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(10) cDNA(10)
Microarray probesets(2)

Other database links

VEGA Gene Model	OTTMUSG00000030703 (Evidence)
Ensembl Gene Model	ENSMUSG00000055069 (Evidence)
Entrez Gene	270160 (Evidence)
UniGene	290285
DFCI	TC1581312
DoTS	DT.40134047
NIA Mouse Gene Index	U030876
Consensus CDS Project	CCDS23185.1
International Mouse Knockout Project Status	Rab39

Sequences

Length	Strain/Species
genomic	OTTMUSG00000030703	VEGA Gene Model | MGI Sequence Detail	22123	C57BL/6J
transcript	OTTMUST00000076017	VEGA | MGI Sequence Detail	2971	Not Applicable
polypeptide	OTTMUSP00000039946	VEGA | MGI Sequence Detail	217	Not Applicable

All sequences(22) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(39 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001806	Small GTPase superfamily
InterPro	IPR003579	Small GTPase superfamily, Rab type
InterPro	IPR005225	Small GTP-binding protein domain
Protein Ontology	PR:000013615	ras-related protein Rab-39A

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)