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Rab39
Gene Detail
Symbol

Name
ID
Rab39
RAB39, member RAS oncogene family
MGI:2442855
Synonyms
C230094F14Rik, Rab39a
Feature Type
protein coding gene
Genetic Map
Chromosome 9
29.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:53684110-53706232 bp, - strand
From VEGA annotation of GRCm38

  22123 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56773  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab39

Human
homologs
Human Homolog RAB39A, RAB39A, member RAS oncogene family
NCBI Gene ID 54734
neXtProt AC  NX_Q14964
Human Synonyms  RAB39
Human Chr (Location)  11q22.3; chr11:107928551-107963482 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(12) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rab39 interacts with 283 markers (Mir1b, Mir7-1, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process GTP catabolic process, intracellular protein transport, ...
Component cytoplasmic vesicle, Golgi apparatus, ...
Function GDP binding, GTPase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000030703 (Evidence)
Ensembl Gene ModelENSMUSG00000055069 (Evidence)
Entrez Gene270160 (Evidence)
UniGene290285
DFCITC1581312
DoTSDT.40134047
NIA Mouse Gene IndexU030876
Consensus CDS ProjectCCDS23185.1
International Mouse Knockout Project StatusRab39
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030703 VEGA Gene Model | MGI Sequence Detail 22123 C57BL/6J ±  kb
transcript OTTMUST00000076017 VEGA | MGI Sequence Detail 2971 Not Applicable 
polypeptide OTTMUSP00000039946 VEGA | MGI Sequence Detail 217 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(2) UniProt(5)
Polymorphisms
SNPs within 2kb(55 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013615 ras-related protein Rab-39A
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory