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Rab39 Gene Detail
Summary
  • Symbol
    Rab39
  • Name
    RAB39, member RAS oncogene family
  • Synonyms
    C230094F14Rik, Rab39a
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442855
    NCBI Gene: 270160
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:53684110-53706232 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 29.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    55 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442855
protein coding gene Chr9:53684110-53706232 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034815
protein coding gene Chr9:52723663-52747035 (-)
A/J MGP_AJ_G0034796
protein coding gene Chr9:51056866-51078959 (-)
AKR/J MGP_AKRJ_G0034724
protein coding gene Chr9:52165960-52194302 (-)
BALB/cJ MGP_BALBcJ_G0034788
protein coding gene Chr9:50809223-50834097 (-)
C3H/HeJ MGP_C3HHeJ_G0034498
protein coding gene Chr9:52643668-52667050 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035307
protein coding gene Chr9:54202982-54228089 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032220
protein coding gene Chr9:50460336-50481297 (-)
CAST/EiJ MGP_CASTEiJ_G0033820
protein coding gene Chr9:52653152-52676118 (-)
CBA/J MGP_CBAJ_G0034469
protein coding gene Chr9:56035440-56066296 (-)
DBA/2J MGP_DBA2J_G0034628
protein coding gene Chr9:50935529-50957745 (-)
FVB/NJ MGP_FVBNJ_G0034570
protein coding gene Chr9:50116281-50139553 (-)
LP/J MGP_LPJ_G0034710
protein coding gene Chr9:53018568-53044263 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034613
protein coding gene Chr9:57622585-57645945 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035329
protein coding gene Chr9:52179548-52202897 (-)
PWK/PhJ MGP_PWKPhJ_G0033524
protein coding gene Chr9:50915145-50937005 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033360
protein coding gene Chr9:52464472-52486628 (-)
WSB/EiJ MGP_WSBEiJ_G0033932
protein coding gene Chr9:52165139-52188461 (-)



Homology
more
  • Human Ortholog
    RAB39A, RAB39A, member RAS oncogene family
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RAB39A, RAB39A, member RAS oncogene family
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RAB39
  • Links
    NCBI Gene ID: 54734
    neXtProt AC: NX_Q14964
    UniProt: Q14964

  • Chr Location
    11q22.3; chr11:107928475-107963482 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 270160 NCBI Gene Model | MGI Sequence Detail 22123 C57BL/6J ±  kb
transcript NM_175562 RefSeq | MGI Sequence Detail 2971 C57BL/6  
polypeptide Q8BHD0 UniProt | EBI | MGI Sequence Detail 217 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 2
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 8
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory