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Pcdh11x
Gene Detail
 Symbol
Name
ID
Pcdh11x
protocadherin 11 X-linked
MGI:2442849
Synonyms A230092L07Rik, PCDHX
Feature Type protein coding gene
Genetic Map
Chromosome X
49.58 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
ChrX:120290259-120910619 bp, + strand
From VEGA annotation of GRCm38

  620361 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13194  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Pcdh11x

Human
homologs
Human Homolog PCDH11X, protocadherin 11 X-linked
NCBI Gene ID 27328
neXtProt AC  NX_Q9BZA7
Human Synonyms  PCDH11, PCDHX, PCDH-X, PPP1R119
Human Chr (Location)  Xq21.3; chrX:91779261-92623230 (+)  GRCh38
Mutations,
alleles, and
phenotypes
Incidental mutations (data from APF )
Interactions
Pcdh11x interacts with 430 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process cell adhesion, negative regulation of phosphatase activity
Component extracellular vesicular exosome, integral component of membrane, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (151)    Tissues (24)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 151
cDNA source data(7)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000018521 (Evidence)
Ensembl Gene ModelENSMUSG00000034755 (Evidence)
Entrez Gene245578 (Evidence)
DFCITC1598257, TC1598383, TC1660265, TC1671730, TC1709528, TC1774254
DoTSDT.101348476, DT.111021163, DT.111021169, DT.111021179, DT.111021182, DT.111021187, DT.40142345, DT.91338114
NIA Mouse Gene IndexU039658
Consensus CDS ProjectCCDS72426.1
International Mouse Knockout Project StatusPcdh11x
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018521 VEGA Gene Model | MGI Sequence Detail 620361 C57BL/6J ±  kb
transcript OTTMUST00000044643 VEGA | MGI Sequence Detail 8675 Not Applicable 
polypeptide OTTMUSP00000020068 VEGA | MGI Sequence Detail 1320 Not Applicable 

For the selected sequences
All sequences(83) RefSeq(23) UniProt(13)
Polymorphisms SNPs within 2kb(3294 from dbSNP Build 137)    SNPs within 2kb including multiple locations(3326)
Protein-related
information
ResourceIDDescription
InterPro IPR002126 Cadherin
InterPro IPR020894 Cadherin conserved site
InterPro IPR015919 Cadherin-like
InterPro IPR013164 Cadherin, N-terminal
InterPro IPR013585 Protocadherin
Protein Ontology PR:000012343 protocadherin-11 X-linked
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:204095 Remeseiro S, et al., Reduction of Nipbl impairs cohesin loading locally and affects transcription but not cohesion-dependent functions in a mouse model of Cornelia de Lange Syndrome. Biochim Biophys Acta. 2013 Dec;1832(12):2097-102
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory