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Pcdh11x Gene Detail
Summary
  • Symbol
    Pcdh11x
  • Name
    protocadherin 11 X-linked
  • Synonyms
    A230092L07Rik, PCDHX
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442849
    NCBI Gene: 245578
  • Gene Overview
    MyGene.info: PCDH11X
  • Alliance
Location & Maps
more
  • Sequence Map
    ChrX:120290259-120910619 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      620361 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome X, 49.58 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    PCDH11X, protocadherin 11 X-linked
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PCDH11X, protocadherin 11 X-linked
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCDH11, PCDHX, PCDH-X, PPP1R119
  • Links
    NCBI Gene ID: 27328
    neXtProt AC: NX_Q9BZA7
    UniProt: Q9BZA7

  • Chr Location
    Xq21.31; chrX:91779310-92623230 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018521 VEGA Gene Model | MGI Sequence Detail 620361 C57BL/6J ±  kb
transcript OTTMUST00000129047 VEGA | MGI Sequence Detail 4454 Not Applicable  
polypeptide OTTMUSP00000069372 VEGA | MGI Sequence Detail 1338 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    3206 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
References
more
  • Summaries
    All 24
    Developmental Gene Expression 8
    Gene Ontology 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:245526 Bibollet-Bahena O, et al., A dual-strategy expression screen for candidate connectivity labels in the developing thalamus. PLoS One. 2017;12(5):e0177977

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/13/2018
MGI 6.11
The Jackson Laboratory