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Pcdh11x
Gene Detail
Symbol

Name
ID
Pcdh11x
protocadherin 11 X-linked
MGI:2442849
Synonyms
A230092L07Rik, PCDHX
Feature Type
protein coding gene
Genetic Map
Chromosome X
49.58 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
ChrX:120290259-120910619 bp, + strand
From VEGA annotation of GRCm38

  620361 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13194  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PCDH11X
Gene Tree: Pcdh11x

Human
homologs
PCDH11X, protocadherin 11 X-linked
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 27328
neXtProt AC: NX_Q9BZA7

Human Synonyms: PCDH11, PCDHX, PCDH-X, PPP1R119

Human Chr (Location): Xq21.3; chrX:91779311-92623230 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from APF , CvDC )
Interactions
Pcdh11x interacts with 429 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process negative regulation of phosphatase activity
Component extracellular exosome
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (151)    Tissues (24)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 151
cDNA source data(7)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100493938    NEW 
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000018521 (Evidence)
Ensembl Gene Model ENSMUSG00000034755 (Evidence)
Entrez Gene 245578 (Evidence)
DFCI TC1774254, TC1709528, TC1598257, TC1671730, TC1660265, TC1598383
DoTS DT.101348476, DT.111021182, DT.111021179, DT.111021169, DT.111021163, DT.40142345, DT.111021187, DT.91338114
NIA Mouse Gene Index U039658
Consensus CDS Project CCDS72426.1
International Mouse Phenotyping Consortium Status Pcdh11x
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018521 VEGA Gene Model | MGI Sequence Detail 620361 C57BL/6J ±  kb
transcript OTTMUST00000129047 VEGA | MGI Sequence Detail 4454 Not Applicable 
polypeptide OTTMUSP00000069372 VEGA | MGI Sequence Detail 1338 Not Applicable 

For the selected sequences
All sequences(103) RefSeq(21) UniProt(15)
Polymorphisms
SNPs within 2kb(3294 from dbSNP Build 137)    SNPs within 2kb including multiple locations(3326)
Protein-related
information
ResourceIDDescription
InterPro IPR002126 Cadherin
InterPro IPR020894 Cadherin conserved site
InterPro IPR015919 Cadherin-like
InterPro IPR013164 Cadherin, N-terminal
InterPro IPR013585 Protocadherin
Protein Ontology PR:000012343 protocadherin-11 X-linked
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:222248 Fossat N, et al., Context-specific function of the LIM homeobox 1 transcription factor in head formation of the mouse embryo. Development. 2015 Jun 1;142(11):2069-79
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory