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Lrrc38 Gene Detail
Summary
  • Symbol
    Lrrc38
  • Name
    leucine rich repeat containing 38
  • Synonyms
    A230053A07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442845
    NCBI Gene: 242735
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:143349757-143371032 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.55 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    286 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442845
protein coding gene Chr4:143346471-143371032 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029067
protein coding gene Chr4:146571269-146593967 (+)
A/J MGP_AJ_G0029027
protein coding gene Chr4:140186052-140207841 (+)
AKR/J MGP_AKRJ_G0028979
protein coding gene Chr4:144218216-144240000 (+)
BALB/cJ MGP_BALBcJ_G0029051
protein coding gene Chr4:140853719-140875249 (+)
C3H/HeJ MGP_C3HHeJ_G0028765
protein coding gene Chr4:144606571-144628885 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029492
protein coding gene Chr4:151599778-151622024 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026762
protein coding gene Chr4:133032996-133053378 (+)
CAST/EiJ MGP_CASTEiJ_G0028197
protein coding gene Chr4:142905676-142930531 (+)
CBA/J MGP_CBAJ_G0028729
protein coding gene Chr4:156151014-156174928 (+)
DBA/2J MGP_DBA2J_G0028879
protein coding gene Chr4:140531638-140553060 (+)
FVB/NJ MGP_FVBNJ_G0028846
protein coding gene Chr4:139698063-139718945 (+)
LP/J MGP_LPJ_G0028978
protein coding gene Chr4:146603566-146627833 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028872
protein coding gene Chr4:159805829-159832135 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029530
protein coding gene Chr4:144773019-144795609 (+)
PWK/PhJ MGP_PWKPhJ_G0027919
protein coding gene Chr4:137446028-137467546 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027742
protein coding gene Chr4:140595614-140622676 (+)
WSB/EiJ MGP_WSBEiJ_G0028275
protein coding gene Chr4:145074040-145097524 (+)



Homology
more
  • Human Ortholog
    LRRC38, leucine rich repeat containing 38
  • Vertebrate Orthologs
    8
  • Human Ortholog
    LRRC38, leucine rich repeat containing 38
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 126755
    neXtProt AC: NX_Q5VT99
    UniProt: Q5VT99

  • Chr Location
    1p36.21; chr1:13474977-13513747 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028584 Ensembl Gene Model | MGI Sequence Detail 21276 C57BL/6J ±  kb
transcript ENSMUST00000052458 Ensembl | MGI Sequence Detail 2324 Not Applicable  
polypeptide ENSMUSP00000053597 Ensembl | MGI Sequence Detail 298 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 2
References
more
  • Summaries
    All 23
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/11/2019
MGI 6.14
The Jackson Laboratory