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BC029214 Gene Detail
Summary
  • Symbol
    BC029214
  • Name
    cDNA sequence BC029214
  • Synonyms
    D930050G13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442831
    NCBI Gene: 227622
Location & Maps
more
  • Sequence Map
    Chr2:25455141-25461094 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      5954 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 17.27 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    C9orf142, chromosome 9 open reading frame 142
  • Vertebrate Orthologs
    6
  • Human Ortholog
    C9orf142, chromosome 9 open reading frame 142
    Orthology source: HGNC, HomoloGene
  • Synonyms
    PAXX, XLS
  • Links
    NCBI Gene ID: 286257
    neXtProt AC: NX_Q9BUH6

  • Chr Location
    9q34.3; chr9:136992418-136993976 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    4
  • Gene trapped
    2
  • Targeted
    2
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000012109 VEGA Gene Model | MGI Sequence Detail 5954 C57BL/6J ±  kb
transcript OTTMUST00000028857 VEGA | MGI Sequence Detail 981 Not Applicable  
polypeptide OTTMUSP00000013052 VEGA | MGI Sequence Detail 205 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    96 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR027873 Protein PAXX
Molecular
Reagents
less
  • All nucleic 43
    cDNA 43

    Microarray probesets 5
References
more
  • Summaries
    All 20
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory