A530020G20Rik Gene Detail

Summary

• Symbol
  A530020G20Rik
• Name
  RIKEN cDNA A530020G20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442825
  NCBI Gene: 319839
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:121326593-121329856 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 52.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442825	lncRNA gene	Chr3:121325268-121329856 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003824	antisense lncRNA gene	Chr3:123726233-123732166 (+)
A/J	MGP_AJ_G0003804	antisense lncRNA gene	Chr3:119603775-119609462 (+)
AKR/J	MGP_AKRJ_G0003780	antisense lncRNA gene	Chr3:122649522-122655657 (+)
BALB/cJ	MGP_BALBcJ_G0003791	antisense lncRNA gene	Chr3:119421889-119426316 (+)
C3H/HeJ	MGP_C3HHeJ_G0003738	antisense lncRNA gene	Chr3:123044306-123049697 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003933	antisense lncRNA gene	Chr3:128213681-128219522 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003436	antisense lncRNA gene	Chr3:115037570-115041704 (+)
CAST/EiJ	MGP_CASTEiJ_G0003702	antisense lncRNA gene	Chr3:122416788-122421198 (+)
CBA/J	MGP_CBAJ_G0003732	antisense lncRNA gene	Chr3:132550848-132557763 (+)
DBA/2J	MGP_DBA2J_G0003744	antisense lncRNA gene	Chr3:118760424-118764851 (+)
FVB/NJ	MGP_FVBNJ_G0003765	antisense lncRNA gene	Chr3:116370255-116374670 (+)
LP/J	MGP_LPJ_G0003826	antisense lncRNA gene	Chr3:125250593-125256574 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003752	antisense lncRNA gene	Chr3:140174083-140179876 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003934	antisense lncRNA gene	Chr3:122204447-122209934 (+)
PWK/PhJ	MGP_PWKPhJ_G0003658	antisense lncRNA gene	Chr3:118453649-118458570 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003602	antisense lncRNA gene	Chr3:120281984-120286408 (+)
WSB/EiJ	MGP_WSBEiJ_G0003738	antisense lncRNA gene	Chr3:122926388-122930934 (+)

Homology

• Gene Tree
  A530020G20Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving A530020G20Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  794
• Tissues
  9
• cDNA Data
  11
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000097124 (Evidence)
• NCBI Gene
  319839

Representative Sequences			Length	Strain/Species
genomic	319839	NCBI Gene Model | MGI Sequence Detail	3264	C57BL/6J
transcript	NR_190113	RefSeq | MGI Sequence Detail	3669	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for A530020G20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31451	Chr3:121326304-121326316 (+)	-283 bp