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H2-T-ps Pseudogene Detail
Summary
  • Symbol
    H2-T-ps
  • Name
    histocompatibility 2, T region locus, pseudogene
  • Synonyms
    C920025E04Rik
Location & Maps
more
  • Sequence Map
    Chr17:36109234-36111658 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2425 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.93 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    HLA-E, major histocompatibility complex, class I, E
  • Vertebrate Orthologs
    7
  • Human Ortholog
    HLA-E, major histocompatibility complex, class I, E
    Orthology source: HomoloGene
  • Synonyms
    EA1.2, EA2.1, HLA-6.2, MHC, QA1
  • Links
    NCBI Gene ID: 3133
    neXtProt AC: NX_P13747

  • Chr Location
    6p21.3; chr6:30489406-30494205 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
  • All Mutations and Alleles
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving H2-T-ps
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037292 VEGA Gene Model | MGI Sequence Detail 2425 C57BL/6J ±  kb
transcript OTTMUST00000096221 VEGA | MGI Sequence Detail 1067 Not Applicable  
polypeptide NP_001257934 RefSeq | MGI Sequence Detail 334 C57BL/6  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    37 from dbSNP Build 142
Molecular
Reagents
less
  • All nucleic 6
    cDNA 5
    Primer pair 1
References
more
  • Summaries
    All 12
    Developmental Gene Expression 4
    Phenotypes 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:171050 Thiagarajan RD, et al., Identification of anchor genes during kidney development defines ontological relationships, molecular subcompartments and regulatory pathways. PLoS One. 2011;6(2):e17286

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory