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Cdh7 Gene Detail
Summary
  • Symbol
    Cdh7
  • Name
    cadherin 7, type 2
  • Synonyms
    9330156F07Rik, CDH7L1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442792
    NCBI Gene: 241201
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:109982431-110140157 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 50.73 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1674 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442792
protein coding gene Chr1:109982190-110145272 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016385
protein coding gene Chr1:112253381-112433704 (+)
A/J MGP_AJ_G0016365
protein coding gene Chr1:108285908-108446916 (+)
AKR/J MGP_AKRJ_G0016329
protein coding gene Chr1:111361213-111525204 (+)
BALB/cJ MGP_BALBcJ_G0016325
protein coding gene Chr1:108438799-108601929 (+)
C3H/HeJ MGP_C3HHeJ_G0016152
protein coding gene Chr1:111757677-111922517 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016784
protein coding gene Chr1:116558800-116750280 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014502
protein coding gene Chr1:102287752-102443957 (+)
CAST/EiJ MGP_CASTEiJ_G0015735
protein coding gene Chr1:110841108-111007645 (+)
CBA/J MGP_CBAJ_G0016124
protein coding gene Chr1:120551365-120726188 (+)
DBA/2J MGP_DBA2J_G0016231
protein coding gene Chr1:107413196-107570673 (+)
FVB/NJ MGP_FVBNJ_G0016230
protein coding gene Chr1:106279844-106439379 (+)
LP/J MGP_LPJ_G0016304
protein coding gene Chr1:113544780-113720385 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016257
protein coding gene Chr1:125590584-125812626 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016822
protein coding gene Chr1:111331685-111501494 (+)
PWK/PhJ MGP_PWKPhJ_G0015520
protein coding gene Chr1:106419393-106584824 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015308
protein coding gene Chr1:109991830-110168790 (+)
WSB/EiJ MGP_WSBEiJ_G0015797
protein coding gene Chr1:111176727-111345845 (+)



Homology
more
  • Human Ortholog
    CDH7, cadherin 7
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CDH7, cadherin 7
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDH7L1
  • Links
    NCBI Gene ID: 1005
    neXtProt AC: NX_Q9ULB5
    UniProt: Q9ULB5

  • Chr Location
    18q22.1; chr18:65750252-65885136 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 68391
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CDH7
  • Protein SuperFamily
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026312 Ensembl Gene Model | MGI Sequence Detail 157727 C57BL/6J ±  kb
    transcript ENSMUST00000112701 Ensembl | MGI Sequence Detail 4945 Not Applicable  
    polypeptide ENSMUSP00000108321 Ensembl | MGI Sequence Detail 785 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 12
      cDNA 11
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 39
      Developmental Gene Expression 12
      Gene Ontology 3
      Phenotypes 8
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:266522 Elsen GE, et al., The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6--> Tbr2--> Tbr1. Front Neurosci. 2018;12:571

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    08/13/2019
    MGI 6.14
    The Jackson Laboratory