9630010A21Rik Gene Detail

Summary

• Symbol
  9630010A21Rik
• Name
  RIKEN cDNA 9630010A21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442787
  NCBI Gene: 319816
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:194696054-194698756 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442787	lncRNA gene	Chr1:194696054-194698756 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000766	unclassified gene	Chr1:202195336-202198026 (+)
A/J	MGP_AJ_G0000742	unclassified gene	Chr1:193891854-193894661 (+)
AKR/J	MGP_AKRJ_G0000731	unclassified gene	Chr1:199627505-199630195 (+)
BALB/cJ	MGP_BALBcJ_G0000734	unclassified gene	Chr1:194595089-194597787 (+)
C3H/HeJ	MGP_C3HHeJ_G0000720	unclassified gene	Chr1:200516228-200518951 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000850	unclassified gene	Chr1:208562642-208565333 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000586	unclassified gene	Chr1:185290563-185293285 (+)
CAST/EiJ	MGP_CASTEiJ_G0000711	unclassified gene	Chr1:200083501-200086207 (+)
CBA/J	MGP_CBAJ_G0000710	unclassified gene	Chr1:216255851-216258567 (+)
DBA/2J	MGP_DBA2J_G0000715	unclassified gene	Chr1:192619927-192622628 (+)
FVB/NJ	MGP_FVBNJ_G0000727	unclassified gene	Chr1:190698792-190701482 (+)
LP/J	MGP_LPJ_G0000772	unclassified gene	Chr1:203336785-203339549 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000719	unclassified gene	Chr1:222906837-222909543 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000843	unclassified gene	Chr1:199482701-199485390 (+)
PWK/PhJ	MGP_PWKPhJ_G0000664	unclassified gene	Chr1:191922118-191924940 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000637	unclassified gene	Chr1:198525157-198527857 (+)
WSB/EiJ	MGP_WSBEiJ_G0000718	unclassified gene	Chr1:199757550-199760263 (+)

Homology

• Gene Tree
  9630010A21Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000103867 (Evidence)
• NCBI Gene
  319816

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103867	Ensembl Gene Model | MGI Sequence Detail	2703	C57BL/6J
transcript	AK038527	GenBank | ENA | DDBJ | MGI Sequence Detail	2706	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 5
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 9630010A21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10858	Chr1:194695928-194695936 (+)	-122 bp