About   Help   FAQ
Slco4c1 Gene Detail
Summary
  • Symbol
    Slco4c1
  • Name
    solute carrier organic anion transporter family, member 4C1
  • Synonyms
    C330017E21Rik, OATP4C1, OATP-H, OATP-M1, PRO2176, SLC21A20
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442784
    NCBI Gene: 227394
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:96816270-96872171 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 47.76 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    928 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442784
protein coding gene Chr1:96816270-96872171 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016356
protein coding gene Chr1:98541651-98603078 (-)
A/J MGP_AJ_G0016340
protein coding gene Chr1:95085236-95143624 (-)
AKR/J MGP_AKRJ_G0016301
protein coding gene Chr1:97859548-97915276 (-)
BALB/cJ MGP_BALBcJ_G0016296
protein coding gene Chr1:95253170-95309490 (-)
C3H/HeJ MGP_C3HHeJ_G0016123
protein coding gene Chr1:98120853-98225580 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016755
protein coding gene Chr1:102465949-102524852 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014473
protein coding gene Chr1:89454405-89509648 (-)
CAST/EiJ MGP_CASTEiJ_G0015705
protein coding gene Chr1:97410407-97469382 (-)
CBA/J MGP_CBAJ_G0016096
protein coding gene Chr1:105816249-105878213 (-)
DBA/2J MGP_DBA2J_G0016201
protein coding gene Chr1:94308494-94364871 (-)
FVB/NJ MGP_FVBNJ_G0016202
protein coding gene Chr1:93310335-93366331 (-)
LP/J MGP_LPJ_G0016275
protein coding gene Chr1:99820392-99878841 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016228
protein coding gene Chr1:109380942-109441325 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016794
protein coding gene Chr1:97852561-97912545 (-)
PWK/PhJ MGP_PWKPhJ_G0015493
protein coding gene Chr1:93543938-93603008 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015277
protein coding gene Chr1:96731720-96791029 (-)
WSB/EiJ MGP_WSBEiJ_G0015768
protein coding gene Chr1:97683424-97743654 (-)



Homology
more
  • Human Ortholog
    SLCO4C1, solute carrier organic anion transporter family member 4C1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SLCO4C1, solute carrier organic anion transporter family member 4C1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    OATP4C1, OATP-H, OATP-M1, OATPX, PRO2176, SLC21A20
  • Links
    NCBI Gene ID: 353189
    neXtProt AC: NX_Q6ZQN7
    UniProt: Q6ZQN7

  • Chr Location
    5q21.1; chr5:102233986-102296549 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 227394 NCBI Gene Model | MGI Sequence Detail 55902 C57BL/6J ±  kb
transcript NM_172658 RefSeq | MGI Sequence Detail 2394 C57BL/6  
polypeptide Q8BGD4 UniProt | EBI | MGI Sequence Detail 722 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 15
    Primer pair 2

    Microarray probesets 2
References
more
  • Summaries
    All 43
    Developmental Gene Expression 12
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:243411 Rutledge EA, et al., Cellular heterogeneity in the ureteric progenitor niche and distinct profiles of branching morphogenesis in organ development. Development. 2017 Sep 01;144(17):3177-3188

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory