Cadm2
Gene Detail

Symbol Name ID

Cadm2 cell adhesion molecule 2 MGI:2442722

Synonyms

2900078E11Rik, A830029E02Rik, Igsf4d, Necl3, SynCAM2

Feature Type

protein coding gene

Genetic Map

Chromosome 16

37.96 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr16:66655421-67620908 bp, - strand From VEGA annotation of GRCm38   965488 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:17705  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Gene Tree: Cadm2

Human homologs

Human Homolog		CADM2, cell adhesion molecule 2
NCBI Gene ID		253559
neXtProt AC		NX_Q8N3J6
Human Synonyms		IGSF4D, Necl-3, NECL3, synCAM2, SynCAM 2
Human Chr (Location)		3p12.1; chr3:85008133-86123579 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(7) : Targeted(4) Gene trapped(3)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	cell adhesion
Component	cell junction, cell projection, ...
Function	protein binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (128)    Tissues (18)    Images (22)
Theiler Stages: 23

Assay Type	Results
RNA in situ	128

cDNA source data(13)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(13) cDNA(13)
Microarray probesets(7)

Other database links

VEGA Gene Model	OTTMUSG00000017090 (Evidence)
Ensembl Gene Model	ENSMUSG00000064115 (Evidence)
Entrez Gene	239857 (Evidence)
PDB	3M45
Consensus CDS Project	CCDS28270.1, CCDS49885.1
International Mouse Knockout Project Status	Cadm2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000017090	VEGA Gene Model | MGI Sequence Detail	965488	C57BL/6J
transcript	OTTMUST00000065610	VEGA | MGI Sequence Detail	3248	Not Applicable
polypeptide	OTTMUSP00000032720	VEGA | MGI Sequence Detail	435	Not Applicable

All sequences(49) RefSeq(4) UniProt(3)

Polymorphisms

SNPs(3427 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR013162	CD80-like, immunoglobulin C2-set
InterPro	IPR013098	Immunoglobulin I-set
InterPro	IPR007110	Immunoglobulin-like
InterPro	IPR013783	Immunoglobulin-like fold
InterPro	IPR003599	Immunoglobulin subtype
InterPro	IPR003598	Immunoglobulin subtype 2
InterPro	IPR013106	Immunoglobulin V-set
InterPro	IPR003585	Neurexin/syndecan/glycophorin C
Protein Ontology	PR:000004961	cell adhesion molecule 2

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Other accession IDs

MGI:1920236