9530051G07Rik Gene Detail

Summary

• Symbol
  9530051G07Rik
• Name
  RIKEN cDNA 9530051G07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442715
  NCBI Gene: 319781
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:151820625-151855911 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442715	lncRNA gene	ChrX:151820625-151855911 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015797	unclassified non-coding RNA gene	ChrX:150836010-150872842 (+)
A/J	MGP_AJ_G0015772	unclassified non-coding RNA gene	ChrX:150025823-150062834 (+)
AKR/J	MGP_AKRJ_G0015737	unclassified non-coding RNA gene	ChrX:154852027-154892227 (+)
BALB/cJ	MGP_BALBcJ_G0015735	unclassified non-coding RNA gene	ChrX:148211076-148251382 (+)
C3H/HeJ	MGP_C3HHeJ_G0015554	unclassified non-coding RNA gene	ChrX:151080910-151123694 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016190	unclassified non-coding RNA gene	ChrX:155208832-155248245 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013910	unclassified non-coding RNA gene	ChrX:141705243-141739040 (+)
CAST/EiJ	MGP_CASTEiJ_G0015113	unclassified non-coding RNA gene	ChrX:130404996-130449391 (+)
CBA/J	MGP_CBAJ_G0015534	unclassified non-coding RNA gene	ChrX:159671898-159717274 (+)
DBA/2J	MGP_DBA2J_G0015632	unclassified non-coding RNA gene	ChrX:149067239-149103825 (+)
FVB/NJ	MGP_FVBNJ_G0015637	unclassified non-coding RNA gene	ChrX:148207235-148248023 (+)
LP/J	MGP_LPJ_G0015715	unclassified non-coding RNA gene	ChrX:151911933-151951714 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015662	unclassified non-coding RNA gene	ChrX:167924605-167971056 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016235	unclassified non-coding RNA gene	ChrX:150356374-150393260 (+)
PWK/PhJ	MGP_PWKPhJ_G0014892	unclassified non-coding RNA gene	ChrX:127369569-127404171 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014678	unclassified non-coding RNA gene	ChrX:130836187-130874313 (+)
WSB/EiJ	MGP_WSBEiJ_G0015213	unclassified non-coding RNA gene	ChrX:148397822-148435139 (+)

Homology

• Gene Tree
  9530051G07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Endonuclease-mediated
  1
• Gene trapped
  5
• Genomic Mutations
  1 involving 9530051G07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000085982 (Evidence)
• NCBI Gene
  319781

Representative Sequences			Length	Strain/Species
genomic	319781	NCBI Gene Model | MGI Sequence Detail	35287	C57BL/6J
transcript	NR_040272	RefSeq | MGI Sequence Detail	4414	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14