Lrrc49
Gene Detail

Symbol Name ID

Lrrc49 leucine rich repeat containing 49 MGI:2442689

Synonyms

D430025H09Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 9

32.75 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr9:60568859-60688158 bp, - strand From VEGA annotation of GRCm38   119300 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9782  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Lrrc49

Human homologs

Human Homolog		LRRC49, leucine rich repeat containing 49
NCBI Gene ID		54839
neXtProt AC		NX_Q8IUZ0
Human Chr (Location)		15q23; chr15:71184928-71342436 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(3) : Targeted(3)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	biological_process
Component	cytoplasm, cytoskeleton, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (10)    Tissues (7)    Images (6)
Theiler Stages: 24, 28

Assay Type	Results
RNA in situ	10

cDNA source data(67)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(68) cDNA(68)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000023677 (Evidence)
Ensembl Gene Model	ENSMUSG00000047766 (Evidence)
Entrez Gene	102747 (Evidence)
UniGene	269413
DFCI	TC1577426, TC1586814, TC1587083, TC1605704, TC1618874
DoTS	DT.101307442, DT.101381434, DT.101381437, DT.40146075, DT.91590126, DT.94274386, DT.99851501
Consensus CDS Project	CCDS23257.1, CCDS52821.1, CCDS52822.1
International Mouse Knockout Project Status	Lrrc49

Sequences

Length	Strain/Species
genomic	OTTMUSG00000023677	VEGA Gene Model | MGI Sequence Detail	119300	C57BL/6J
transcript	OTTMUST00000057794	VEGA | MGI Sequence Detail	3017	Not Applicable
polypeptide	OTTMUSP00000027933	VEGA | MGI Sequence Detail	752	Not Applicable

All sequences(74) RefSeq(6) UniProt(9)

Polymorphisms

SNPs(503 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001611	Leucine-rich repeat
InterPro	IPR025875	Leucine rich repeat 4
Protein Ontology	PR:000030303	leucine-rich repeat-containing protein 49

References

(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Other accession IDs

MGI:2143047, MGI:2143284