C130023A14Rik Gene Detail

Summary

• Symbol
  C130023A14Rik
• Name
  RIKEN cDNA C130023A14 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442654
  NCBI Gene: 319747
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:77443228-77446314 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442654	lncRNA gene	Chr16:77443228-77446314 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0000927	unclassified gene	Chr16:77778333-77781374 (+)
A/J	MGP_AJ_G0000903	unclassified gene	Chr16:74345411-74348521 (+)
AKR/J	MGP_AKRJ_G0000891	unclassified gene	Chr16:76579709-76582793 (+)
BALB/cJ	MGP_BALBcJ_G0000896	unclassified gene	Chr16:74741431-74744495 (+)
C3H/HeJ	MGP_C3HHeJ_G0000879	unclassified gene	Chr16:77035975-77039029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001011	unclassified gene	Chr16:80268961-80272013 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000744	unclassified gene	Chr16:72810277-72813444 (+)
CAST/EiJ	MGP_CASTEiJ_G0000871	unclassified gene	Chr16:77445744-77448903 (+)
CBA/J	MGP_CBAJ_G0000871	unclassified gene	Chr16:83701777-83704835 (+)
DBA/2J	MGP_DBA2J_G0000875	unclassified gene	Chr16:74192839-74195913 (+)
FVB/NJ	MGP_FVBNJ_G0000887	unclassified gene	Chr16:73547998-73551040 (+)
LP/J	MGP_LPJ_G0000930	unclassified gene	Chr16:77516106-77519129 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000878	unclassified gene	Chr16:86908058-86911831 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001005	unclassified gene	Chr16:76915170-76918242 (+)
PWK/PhJ	MGP_PWKPhJ_G0000825	unclassified gene	Chr16:74390093-74393253 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0000798	unclassified gene	Chr16:76536622-76539774 (+)
WSB/EiJ	MGP_WSBEiJ_G0000879	unclassified gene	Chr16:77133986-77137017 (+)

Homology

• Gene Tree
  C130023A14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving C130023A14Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000102854 (Evidence)
• NCBI Gene
  319747

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102854	Ensembl Gene Model | MGI Sequence Detail	3087	C57BL/6J
transcript	AK047945	GenBank | ENA | DDBJ | MGI Sequence Detail	3091	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:335294 Redhead Y, et al., Craniofacial dysmorphology in Down syndrome is caused by increased dosage of Dyrk1a and at least three other genes. Development. 2023 Apr 15;150(8):dev201077

TSS for C130023A14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139109	Chr16:77443226-77443230 (+)	0 bp