9630013D21Rik Gene Detail

Summary

• Symbol
  9630013D21Rik
• Name
  RIKEN cDNA 9630013D21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442649
  NCBI Gene: 319743
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:109509624-109514785 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 51.32 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442649	lncRNA gene	Chr4:109508726-109515050 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015567	unclassified non-coding RNA gene	Chr4:110422386-110428633 (-)
A/J	MGP_AJ_G0015544	unclassified non-coding RNA gene	Chr4:106448533-106454857 (-)
AKR/J	MGP_AKRJ_G0015508	unclassified non-coding RNA gene	Chr4:109111671-109117994 (-)
BALB/cJ	MGP_BALBcJ_G0015506	unclassified non-coding RNA gene	Chr4:106664081-106670401 (-)
C3H/HeJ	MGP_C3HHeJ_G0015328	unclassified non-coding RNA gene	Chr4:109864356-109870687 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015959	unclassified non-coding RNA gene	Chr4:114404207-114414410 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013695	unclassified non-coding RNA gene	Chr4:101742149-101748488 (-)
CAST/EiJ	MGP_CASTEiJ_G0014883	unclassified non-coding RNA gene	Chr4:107699902-107711177 (-)
CBA/J	MGP_CBAJ_G0015309	unclassified non-coding RNA gene	Chr4:118153138-118159445 (-)
DBA/2J	MGP_DBA2J_G0015403	unclassified non-coding RNA gene	Chr4:106075586-106081942 (-)
FVB/NJ	MGP_FVBNJ_G0015410	unclassified non-coding RNA gene	Chr4:104950505-104956829 (-)
LP/J	MGP_LPJ_G0015483	unclassified non-coding RNA gene	Chr4:110695888-110702212 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015433	unclassified non-coding RNA gene	Chr4:123333927-123341109 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016001	unclassified non-coding RNA gene	Chr4:109342740-109349064 (-)
PWK/PhJ	MGP_PWKPhJ_G0014668	unclassified non-coding RNA gene	Chr4:104365962-104372310 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014457	unclassified non-coding RNA gene	Chr4:106728273-106734549 (-)
WSB/EiJ	MGP_WSBEiJ_G0014988	unclassified non-coding RNA gene	Chr4:109528557-109535995 (-)

Homology

• Gene Tree
  9630013D21Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 9630013D21Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000059027 (Evidence)
• NCBI Gene
  319743

Representative Sequences			Length	Strain/Species
genomic	319743	NCBI Gene Model | MGI Sequence Detail	5162	C57BL/6J
transcript	NR_166454	RefSeq | MGI Sequence Detail	1017	C57BL/6
polypeptide	Q8BFV1	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 9630013D21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42774	Chr4:109515016-109515043 (-)	-245 bp
Tssr42773	Chr4:109513723-109513737 (-)	1,055 bp