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Slitrk4 Gene Detail
Summary
  • Symbol
    Slitrk4
  • Name
    SLIT and NTRK-like family, member 4
  • Synonyms
    D930039I09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442509
    NCBI Gene: 245446
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:64264885-64276996 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 34.57 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    59 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442509
protein coding gene ChrX:64264883-64277394 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035766
protein coding gene ChrX:59766653-59778786 (-)
A/J MGP_AJ_G0035748
protein coding gene ChrX:59961211-59973320 (-)
AKR/J MGP_AKRJ_G0035668
protein coding gene ChrX:61601863-61613928 (-)
BALB/cJ MGP_BALBcJ_G0035735
protein coding gene ChrX:59306670-59318801 (-)
C3H/HeJ MGP_C3HHeJ_G0035438
protein coding gene ChrX:60407037-60419142 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036264
protein coding gene ChrX:61564954-61577055 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033116
protein coding gene ChrX:59356412-59368511 (-)
CAST/EiJ MGP_CASTEiJ_G0034730
protein coding gene ChrX:45948819-45959239 (-)
CBA/J MGP_CBAJ_G0035412
protein coding gene ChrX:63283646-63296180 (-)
DBA/2J MGP_DBA2J_G0035566
protein coding gene ChrX:59547532-59557826 (-)
FVB/NJ MGP_FVBNJ_G0035516
protein coding gene ChrX:59040780-59053424 (-)
LP/J MGP_LPJ_G0035654
protein coding gene ChrX:60471901-60486756 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035552
protein coding gene ChrX:65068900-65076102 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036280
protein coding gene ChrX:59712565-59724687 (-)
PWK/PhJ MGP_PWKPhJ_G0034426
protein coding gene ChrX:44170876-44181318 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034269
protein coding gene ChrX:46892351-46905373 (-)
WSB/EiJ MGP_WSBEiJ_G0034873
protein coding gene ChrX:59169105-59181396 (-)



Homology
more
  • Human Ortholog
    SLITRK4, SLIT and NTRK like family member 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLITRK4, SLIT and NTRK like family member 4
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 139065
    neXtProt AC: NX_Q8IW52
    UniProt: Q8IW52

  • Chr Location
    Xq27.3; chrX:143622790-143636107 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000046699 Ensembl Gene Model | MGI Sequence Detail 12112 C57BL/6J ±  kb
    transcript ENSMUST00000069926 Ensembl | MGI Sequence Detail 8494 Not Applicable  
    polypeptide ENSMUSP00000064443 Ensembl | MGI Sequence Detail 837 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 13
      Other 2

      Microarray probesets 4
    References
    more
    • Summaries
      All 31
      Developmental Gene Expression 5
      Gene Ontology 7
      Phenotypes 5
    • Earliest
      J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
    • Latest
      J:241468 Yamagata A, et al., Structure of Slitrk2-PTPdelta complex reveals mechanisms for splicing-dependent trans-synaptic adhesion. Sci Rep. 2015 May 19;5:9686

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/13/2018
    MGI 6.13
    The Jackson Laboratory