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Slc25a40 Gene Detail
Summary
  • Symbol
    Slc25a40
  • Name
    solute carrier family 25, member 40
  • Synonyms
    B230315F11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442486
    NCBI Gene: 319653
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:8422850-8454797 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 3.43 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    381 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442486
protein coding gene Chr5:8422820-8454839 (.)
129S1/SvImJ no annotation
A/J MGP_AJ_G0029247
protein coding gene Chr5:5241866-5305211 (+)
AKR/J MGP_AKRJ_G0029196
protein coding gene Chr5:5360168-5393229 (+)
BALB/cJ MGP_BALBcJ_G0029264
protein coding gene Chr5:5430172-5463097 (+)
C3H/HeJ MGP_C3HHeJ_G0028984
protein coding gene Chr5:5547398-5613337 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029714
protein coding gene Chr5:5901566-5935833 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026957
protein coding gene Chr5:5032232-5060223 (+)
CAST/EiJ MGP_CASTEiJ_G0028397
protein coding gene Chr5:5409319-5442085 (+)
CBA/J MGP_CBAJ_G0028945
protein coding gene Chr5:6008223-6047903 (+)
DBA/2J MGP_DBA2J_G0029099
protein coding gene Chr5:5351030-5413471 (+)
FVB/NJ MGP_FVBNJ_G0029061
protein coding gene Chr5:5148804-5182424 (+)
LP/J MGP_LPJ_G0029188
protein coding gene Chr5:5520655-5556551 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029088
protein coding gene Chr5:6036132-6074732 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0027952
protein coding gene Chr5:5540732-5567725 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SLC25A40, solute carrier family 25 member 40
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC25A40, solute carrier family 25 member 40
    Orthology source: HGNC, HomoloGene
  • Synonyms
    MCFP
  • Links
    NCBI Gene ID: 55972
    neXtProt AC: NX_Q8TBP6
    UniProt: Q8TBP6

  • Chr Location
    7q21.12; chr7:87834499-87876377 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    5 phenotype references
Mice homozygous for a gene-trapped allele are viable and overtly normal in a battery of physiological, metabolic, and behavioral assays.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054099 Ensembl Gene Model | MGI Sequence Detail 31948 C57BL/6J ±  kb
transcript ENSMUST00000066921 Ensembl | MGI Sequence Detail 2784 Not Applicable  
polypeptide ENSMUSP00000067611 Ensembl | MGI Sequence Detail 337 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 43
    cDNA 42
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory