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Rab9b
Gene Detail
Symbol

Name
ID
Rab9b
RAB9B, member RAS oncogene family
MGI:2442454
Synonyms
9330195C02Rik
Feature Type
protein coding gene
Genetic Map
Chromosome X
59.10 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:136858147-136868755 bp, - strand
From VEGA annotation of GRCm38

  10609 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3136  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: RAB9B
Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab9b

Human
homologs
RAB9B, RAB9B, member RAS oncogene family
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 51209
neXtProt AC: NX_Q9NP90

Human Synonyms: Rab-9L, RAB9L

Human Chr (Location): Xq22.2; chrX:103822325-103832282 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Targeted(5)
Interactions
Rab9b interacts with 368 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (19 annotations)
Process intracellular protein transport, protein transport, ...
Component cytoplasmic vesicle, late endosome, ...
Function GDP binding, GTPase activity, ...
External Resources: FuncBase
Expression
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase rab9b    NEW 
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000018802 (Evidence)
Ensembl Gene Model ENSMUSG00000043463 (Evidence)
Entrez Gene 319642 (Evidence)
UniGene 44557
DFCI TC1587215, TC1629423
DoTS DT.101360794
NIA Mouse Gene Index U039724
Consensus CDS Project CCDS30425.1
International Mouse Phenotyping Consortium Status Rab9b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000018802 VEGA Gene Model | MGI Sequence Detail 10609 C57BL/6J ±  kb
transcript OTTMUST00000045266 VEGA | MGI Sequence Detail 3980 Not Applicable 
polypeptide OTTMUSP00000020360 VEGA | MGI Sequence Detail 201 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(2) UniProt(2)
Polymorphisms
SNPs within 2kb(13 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013645 ras-related protein Rab-9B
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory