About   Help   FAQ
Cd300lf
Gene Detail
Symbol

Name
ID
Cd300lf
CD300 antigen like family member F
MGI:2442359
Synonyms
CLM-1, DIgR2, F730004D16Rik, IgSF13, IREM1, LMIR3, Pigr3
Feature Type
protein coding gene
Genetic Map
Chromosome 11
80.59 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr11:115116214-115133992 bp, - strand
From VEGA annotation of GRCm38

  17779 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:51396  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: CD300 antigen like protein
Gene Tree: Cd300lf

Human
homologs
Human Homolog CD300LF, CD300 molecule-like family member f
NCBI Gene ID 146722
neXtProt AC  NX_Q8TDQ1
Human Synonyms  CD300f, CLM1, CLM-1, IgSF13, IREM1, IREM-1, LMIR3, NKIR
Human Chr (Location)  17q25.1; chr17:74694308-74713000 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from APF )
 
Mice homozygous for a knock-out allele exhibit increased severity of experimental autoimmune encephalomyelitis with increased demyelination.
 
Interactions
Cd300lf interacts with 91 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process immune system process, osteoclast differentiation
Component integral component of membrane, membrane, ...
Function protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (2)    Tissues (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 2
cDNA source data(18)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(18) cDNA(18)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000003642 (Evidence)
Ensembl Gene ModelENSMUSG00000047798 (Evidence)
Entrez Gene246746 (Evidence)
UniGene277387
DFCITC1583435, TC1592163, TC1600036, TC1609039
DoTSDT.101255427, DT.101379347, DT.99839769, DT.99839770, DT.99839771
NIA Mouse Gene IndexU033609
PDB1ZOX
Consensus CDS ProjectCCDS25619.1, CCDS48980.1
International Mouse Knockout Project StatusCd300lf
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000003642 VEGA Gene Model | MGI Sequence Detail 17779 C57BL/6J ±  kb
transcript OTTMUST00000007863 VEGA | MGI Sequence Detail 1885 Not Applicable 
polypeptide OTTMUSP00000003815 VEGA | MGI Sequence Detail 337 Not Applicable 

For the selected sequences
All sequences(67) RefSeq(15) UniProt(5)
Polymorphisms
SNPs within 2kb(198 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013783 Immunoglobulin-like fold
InterPro IPR003599 Immunoglobulin subtype
InterPro IPR013106 Immunoglobulin V-set
Protein Ontology PR:000005168 CMRF35-like molecule 1
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:193822 Lumayag S, et al., Inactivation of the microRNA-183/96/182 cluster results in syndromic retinal degeneration. Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):E507-16
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/21/2014
MGI 5.20
The Jackson Laboratory