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Csgalnact1
Gene Detail
Symbol

Name
ID
Csgalnact1
chondroitin sulfate N-acetylgalactosaminyltransferase 1
MGI:2442354
Synonyms
4732435N03Rik, CSGalNAcT-1
Feature Type
protein coding gene
Genetic Map
Chromosome 8
33.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:68356781-68735146 bp, - strand
From VEGA annotation of GRCm38

  378366 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23099  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: CSGALNACT1
Gene Tree: Csgalnact1

Human
homologs
CSGALNACT1, chondroitin sulfate N-acetylgalactosaminyltransferase 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 55790
neXtProt AC: NX_Q8TDX6

Human Synonyms: beta4GalNAcT, ChGn, CSGalNAcT-1

Human Chr (Location): 8p21.3; chr8:19404161-19757271 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(3) Targeted(5)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Mice homozygous for a knock-out allele exhibit decreased body weight and length, short limbs, and abnormal cartilage.
 
Interactions
Csgalnact1 interacts with 272 markers (Mir7-1, Mir7-2, Mir7b, ...)
Expression
Literature Summary: (5 records)
Data Summary: Results (100)    Tissues (96)    Images (9)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
Western blot 3
RT-PCR 3
cDNA source data(8)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase csgalnact1    NEW 
Molecular
reagents
All nucleic(9) cDNA(8) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000024914 (Evidence)
Ensembl Gene Model ENSMUSG00000036356 (Evidence)
Entrez Gene 234356 (Evidence)
DFCI TC1579630, TC1631036
DoTS DT.101735087, DT.55276483, DT.94282677, DT.97363903
EC 2.4.1.174
Consensus CDS Project CCDS22341.1
International Mouse Phenotyping Consortium Status Csgalnact1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024914 VEGA Gene Model | MGI Sequence Detail 378366 C57BL/6J ±  kb
transcript OTTMUST00000061382 VEGA | MGI Sequence Detail 3029 Not Applicable 
polypeptide OTTMUSP00000030097 VEGA | MGI Sequence Detail 530 Not Applicable 

For the selected sequences
All sequences(64) RefSeq(20) UniProt(1)
Polymorphisms
SNPs within 2kb(3463 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008428 Chondroitin N-acetylgalactosaminyltransferase
InterPro IPR029044 Nucleotide-diphospho-sugar transferases
Protein Ontology PR:000005933 chondroitin sulfate N-acetylgalactosaminyltransferase 1
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:219334 Izumikawa T, et al., GlcUAbeta1-3Galbeta1-3Galbeta1-4Xyl(2-O-phosphate) Is the Preferred Substrate for Chondroitin N-Acetylgalactosaminyltransferase-1. J Biol Chem. 2015 Feb 27;290(9):5438-48
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory