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Csgalnact1
Gene Detail
 Symbol
Name
ID
Csgalnact1
chondroitin sulfate N-acetylgalactosaminyltransferase 1
MGI:2442354
Synonyms 4732435N03Rik, CSGalNAcT-1
Feature Type protein coding gene
Genetic Map
Chromosome 8
33.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:68356781-68735146 bp, - strand
From VEGA annotation of GRCm38

  378366 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:23099  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Csgalnact1

Human
homologs
Human Homolog CSGALNACT1, chondroitin sulfate N-acetylgalactosaminyltransferase 1
NCBI Gene ID 55790
neXtProt AC  NX_Q8TDX6
Human Synonyms  beta4GalNAcT, ChGn, CSGalNAcT-1
Human Chr (Location)  8p21.3; chr8:19404161-19757245 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(3) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a knock-out allele exhibit decreased body weight and length, short limbs, and abnormal cartilage.
 
Interactions
Csgalnact1 interacts with 273 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process cartilage development, chondroitin sulfate biosynthetic process, ...
Component Golgi apparatus, Golgi cisterna membrane, ...
Function acetylgalactosaminyltransferase activity, glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (100)    Tissues (96)    Images (9)
Theiler Stages: 22, 26, 28
Assay TypeResults
RNA in situ 94
Western blot 3
RT-PCR 3
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(9) cDNA(8) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000024914 (Evidence)
Ensembl Gene ModelENSMUSG00000036356 (Evidence)
Entrez Gene234356 (Evidence)
DFCITC1579630, TC1631036
DoTSDT.101735087, DT.55276483, DT.94282677, DT.97363903
EC2.4.1.174
Consensus CDS ProjectCCDS22341.1
International Mouse Knockout Project StatusCsgalnact1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024914 VEGA Gene Model | MGI Sequence Detail 378366 C57BL/6J ±  kb
transcript OTTMUST00000061381 VEGA | MGI Sequence Detail 3943 Not Applicable 
polypeptide OTTMUSP00000030096 VEGA | MGI Sequence Detail 530 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(18) UniProt(1)
Polymorphisms SNPs within 2kb(3463 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008428 Chondroitin N-acetylgalactosaminyltransferase
Protein Ontology PR:000005933 chondroitin sulfate N-acetylgalactosaminyltransferase 1
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:188649 Takase H, et al., Genome-wide identification of endothelial cell-enriched genes in the mouse embryo. Blood. 2012 Jul 26;120(4):914-23
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory