Zfp608 Gene Detail

Summary

• Symbol
  Zfp608
• Name
  zinc finger protein 608
• Synonyms
  4932417D18Rik

• Feature Type
  protein coding gene
• IDs
  MGI:2442338
  NCBI Gene: 269023
• Gene Overview
  MyGene.info: ZNF608

Location & Maps

• Sequence Map
  Chr18:54888045-54990180 bp, - strand
• From Ensembl annotation of GRCm38
  

  Mouse Genome Browser
  
  

• Download
  Sequence
    102136 bp   ±  kb flank
  
  
• Genome Browsers
  VEGA | Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 29.28 cM
• Mapping Data
  1 experiment

Homology

• Human Ortholog
  ZNF608, zinc finger protein 608

• Vertebrate Orthologs
  10

• Human Ortholog
  ZNF608, zinc finger protein 608
  Orthology source: HomoloGene, HGNC
• Synonyms
  NY-REN-36
• Links
  HGNC:29238

  NCBI Gene ID: 57507

  neXtProt AC: NX_Q9ULD9

  UniProt: Q9ULD9

  
  
• Chr Location
  5q23.2; chr5:124636913-124748824 (-)  GRCh38.p7

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• HomoloGene
  Vertebrate Homology Class 18485
  1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  
• HCOP
  human homology predictions: ZNF608
• Gene Tree
  Zfp608
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Incidental Mutations
  Mutagenetix , APF , CvDC
• Find Mice (IMSR)
  31 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  2

• External Resources
  FuncBase

Expression

• Assay Results
  5
• Tissues
  5
• cDNA Data
  16
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase znf608

Interactions

• Zfp608 interacts with 313 markers (Mir1b, Mir7-1, Mir7-2, ...) View All

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  15
• UniProt
  4
• CCDS
  CCDS37824.1

• Ensembl
  ENSMUSG00000052713 (Evidence)
• NCBI Gene
  269023

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052713	Ensembl Gene Model | MGI Sequence Detail	102136	C57BL/6J
transcript	ENSMUST00000064763	Ensembl | MGI Sequence Detail	6112	Not Applicable
polypeptide	ENSMUSP00000068192	Ensembl | MGI Sequence Detail	1511	Not Applicable

Polymorphisms

• SNPs within 2kb
  191 from dbSNP Build 142

Protein
Information

• UniProt
  4 Sequences
• Protein Ontology
  PR:000018024 zinc finger protein 608
  (term hierarchy)
• InterPro Domains
  IPR013087 Zinc finger C2H2-type

Molecular
Reagents

• All nucleic 17

  cDNA 16

  Primer pair 1

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Developmental Gene Expression 1

  Gene Ontology 2

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:176460 Ayoub AE, et al., Transcriptional programs in transient embryonic zones of the cerebral cortex defined by high-resolution mRNA sequencing. Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):14950-5