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Trmt9b Gene Detail
Summary
  • Symbol
    Trmt9b
  • Name
    tRNA methyltransferase 9B
  • Synonyms
    6430573F11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442328
    NCBI Gene: 319582
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:36457286-36514569 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 23.05 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    793 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442328
protein coding gene Chr8:36457286-36516570 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033544
protein coding gene Chr8:35117804-35179793 (+)
A/J MGP_AJ_G0033524
protein coding gene Chr8:33750475-33807249 (+)
AKR/J MGP_AKRJ_G0033448
protein coding gene Chr8:34776566-34837982 (+)
BALB/cJ MGP_BALBcJ_G0033520
protein coding gene Chr8:33840885-33897650 (+)
C3H/HeJ MGP_C3HHeJ_G0033232
protein coding gene Chr8:35124512-35190378 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034036
protein coding gene Chr8:36427619-36485128 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030985
protein coding gene Chr8:30658489-30714235 (+)
CAST/EiJ MGP_CASTEiJ_G0032559
protein coding gene Chr8:34603334-34667120 (+)
CBA/J MGP_CBAJ_G0033210
protein coding gene Chr8:37859521-37924485 (+)
DBA/2J MGP_DBA2J_G0033363
protein coding gene Chr8:33655060-33713168 (+)
FVB/NJ MGP_FVBNJ_G0033308
protein coding gene Chr8:33312184-33367054 (+)
LP/J MGP_LPJ_G0033453
protein coding gene Chr8:35083054-35148175 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033350
protein coding gene Chr8:37256623-37319604 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034055
protein coding gene Chr8:34920978-34982334 (+)
PWK/PhJ MGP_PWKPhJ_G0032269
protein coding gene Chr8:33220007-33275083 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032101
protein coding gene Chr8:34160023-34218154 (+)
WSB/EiJ MGP_WSBEiJ_G0032675
protein coding gene Chr8:35106326-35172536 (+)



Homology
more
  • Human Ortholog
    TRMT9B, tRNA methyltransferase 9B (putative)
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRMT9B, tRNA methyltransferase 9B (putative)
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C8orf79, hTRM9L, KIAA1456, TRM9L
  • Links
    NCBI Gene ID: 57604
    neXtProt AC: NX_Q9P272
    UniProt: Q9P272

  • Chr Location
    8p22; chr8:12945674-13029777 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 319582 NCBI Gene Model | MGI Sequence Detail 57284 C57BL/6J ±  kb
transcript NM_176952 RefSeq | MGI Sequence Detail 1825 C57BL/6  
polypeptide Q80WQ4 UniProt | EBI | MGI Sequence Detail 447 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • EC
  • InterPro Domains
    IPR013216 Methyltransferase type 11
    IPR032873 Probable tRNA methyltransferase 9-like protein
    IPR029063 S-adenosyl-L-methionine-dependent methyltransferase
Molecular
Reagents
less
  • All nucleic 16
    cDNA 16

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory