C730027H18Rik Gene Detail

Summary

• Symbol
  C730027H18Rik
• Name
  RIKEN cDNA C730027H18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442303
  NCBI Gene: 319572
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:71004567-71017870 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 36.81 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  496 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442303	lncRNA gene	Chr10:71004567-71017906 (-)
129S1/SvImJ	ENSMUSG00200017556	lncRNA gene	Chr10:67701306-67712524 (-)
A/J	ENSMUSG00195006087	lncRNA gene	Chr10:67998643-68009863 (-)
AKR/J	ENSMUSG00220030193	lncRNA gene	Chr10:67667389-67678614 (-)
BALB/cJ	ENSMUSG00180007739	lncRNA gene	Chr10:68033082-68044308 (-)
C3H/HeJ	ENSMUSG00175013489	lncRNA gene	Chr10:67873204-67884409 (-)
C57BL/6NJ	ENSMUSG00215004012	lncRNA gene	Chr10:67642465-67653686 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027013	lncRNA gene	Chr10:67576575-67587921 (-)
CBA/J	ENSMUSG00210010114	lncRNA gene	Chr10:67747872-67759075 (-)
DBA/2J	ENSMUSG00185021017	lncRNA gene	Chr10:68103493-68114709 (-)
FVB/NJ	ENSMUSG00205007650	lncRNA gene	Chr10:67842927-67854145 (-)
JF1/MsJ	ENSUMUG00000022262	lncRNA gene	Chr10:69266113-69277486 (-)
LP/J	ENSMUSG00230019789	lncRNA gene	Chr10:69873465-69884683 (-)
NOD/ShiLtJ	ENSMUSG00190008065	lncRNA gene	Chr10:68097187-68108522 (-)
NZO/HlLtJ	ENSMUSG00225048725	lncRNA gene	Chr10:74169674-74180892 (-)
PWK/PhJ	ENSLUMG00010008078	lncRNA gene	Chr10:67690829-67702223 (-)
SPRET/EiJ	ENSMSPG00010024539	lncRNA gene	Chr10:69374364-69385538 (-)
WSB/EiJ	ENSIUOG00005035556	lncRNA gene	Chr10:67597122-67608407 (-)

Homology

• Gene Tree
  C730027H18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving C730027H18Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  1

• Ensembl
  ENSMUSG00000112189 (Evidence)
• NCBI Gene
  319572

Representative Sequences			Length	Strain/Species
genomic	319572	NCBI Gene Model | MGI Sequence Detail	13304	C57BL/6J
transcript	NR_038040	RefSeq | MGI Sequence Detail	2300	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C730027H18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98068	Chr10:71017847-71017888 (-)	2 bp