9630028B13Rik Gene Detail

Summary

• Symbol
  9630028B13Rik
• Name
  RIKEN cDNA 9630028B13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442281
  NCBI Gene: 319562
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:185161554-185174016 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 89.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  463 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442281	lncRNA gene	Chr1:185161552-185174016 (-)
129S1/SvImJ	ENSMUSG00200023507	lncRNA gene	Chr1:182941423-182954058 (-)
A/J	ENSMUSG00195043528	lncRNA gene	Chr1:182526244-182538711 (-)
A/J	ENSMUSG00195041512	protein coding gene	Chr1:182526352-182538748 (-)
AKR/J	ENSMUSG00220020835	lncRNA gene	Chr1:181750190-181762856 (-)
BALB/cJ	ENSMUSG00180040291	lncRNA gene	Chr1:182592457-182604926 (-)
BALB/cJ	ENSMUSG00180032829	protein coding gene	Chr1:182592565-182604963 (-)
C3H/HeJ	ENSMUSG00175033613	protein coding gene	Chr1:182768061-182780443 (-)
C3H/HeJ	ENSMUSG00175040062	lncRNA gene	Chr1:182767953-182780406 (-)
C57BL/6NJ	ENSMUSG00215024409	protein coding gene	Chr1:181977879-181990276 (-)
C57BL/6NJ	ENSMUSG00215032840	lncRNA gene	Chr1:181977771-181990239 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002465	antisense lncRNA gene	Chr1:175294687-175307564 (-)
CAST/EiJ	ENSTCUG00005043339	lncRNA gene	Chr1:180536539-180549169 (-)
CBA/J	ENSMUSG00210019396	lncRNA gene	Chr1:182427774-182440243 (-)
DBA/2J	ENSMUSG00185036519	lncRNA gene	Chr1:187042445-187054916 (-)
FVB/NJ	ENSMUSG00205036797	lncRNA gene	Chr1:181460555-181473014 (-)
FVB/NJ	ENSMUSG00205032049	protein coding gene	Chr1:181460663-181473051 (-)
JF1/MsJ	ENSUMUG00000006779	lncRNA gene	Chr1:186042886-186055533 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190036040	lncRNA gene	Chr1:182442148-182454604 (-)
NOD/ShiLtJ	ENSMUSG00190029808	protein coding gene	Chr1:182442256-182454641 (-)
NZO/HlLtJ	ENSMUSG00225011876	lncRNA gene	Chr1:190336363-190348831 (-)
NZO/HlLtJ	ENSMUSG00225010552	protein coding gene	Chr1:190336471-190348868 (-)
PWK/PhJ	ENSLUMG00010017116	lncRNA gene	Chr1:181290186-181302679 (-)
SPRET/EiJ	ENSMSPG00010027366	lncRNA gene	Chr1:184792190-184804778 (-)
WSB/EiJ	ENSIUOG00005011870	lncRNA gene	Chr1:181635722-181648183 (-)

Homology

• Gene Tree
  9630028B13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  610
• Tissues
  3
• cDNA Data
  5
• Literature Summary
  4

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000051295 (Evidence)
• NCBI Gene
  319562

Representative Sequences			Length	Strain/Species
genomic	319562	NCBI Gene Model | MGI Sequence Detail	12463	C57BL/6J
transcript	NR_038006	RefSeq | MGI Sequence Detail	3406	C57BL/6
polypeptide	Q8BH25	UniProt | EBI | MGI Sequence Detail	160	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 14

  Developmental Gene Expression 4

  Phenotypes 1
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:314103 Ulmke PA, et al., Molecular Profiling Reveals Involvement of ESCO2 in Intermediate Progenitor Cell Maintenance in the Developing Mouse Cortex. Stem Cell Reports. 2021 Apr 13;16(4):968-984

TSS for 9630028B13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15672	Chr1:185173938-185173958 (-)	68 bp
Tssr15671	Chr1:185173912-185173932 (-)	94 bp