A330041J22Rik Gene Detail

Summary

• Symbol
  A330041J22Rik
• Name
  RIKEN cDNA A330041J22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442269
  NCBI Gene: 319556
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:86577513-86583306 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 46.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442269	lncRNA gene	Chr9:86577495-86583306 (+)
129S1/SvImJ	ENSMUSG00200005561	lncRNA gene	Chr9:83702771-83708556 (+)
A/J	ENSMUSG00195007880	lncRNA gene	Chr9:83484727-83490509 (+)
A/J	ENSMUSG00195007280	protein coding gene	Chr9:83484538-83490404 (+)
AKR/J	ENSMUSG00220019968	lncRNA gene	Chr9:83610979-83616746 (+)
BALB/cJ	ENSMUSG00180007124	lncRNA gene	Chr9:83589625-83595407 (+)
C3H/HeJ	ENSMUSG00175004750	lncRNA gene	Chr9:83649218-83654998 (+)
C57BL/6NJ	ENSMUSG00215010939	lncRNA gene	Chr9:83584300-83590096 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004263	lncRNA gene	Chr9:83173324-83179095 (+)
CBA/J	ENSMUSG00210006608	lncRNA gene	Chr9:83702966-83708755 (+)
DBA/2J	ENSMUSG00185002066	lncRNA gene	Chr9:83713983-83719739 (+)
FVB/NJ	ENSMUSG00205005136	lncRNA gene	Chr9:83890645-83896395 (+)
JF1/MsJ	ENSUMUG00000032215	lncRNA gene	Chr9:83583894-83589690 (+)
LP/J	ENSMUSG00230009888	lncRNA gene	Chr9:83833638-83839423 (+)
NOD/ShiLtJ	ENSMUSG00190011235	lncRNA gene	Chr9:83780737-83786504 (+)
NZO/HlLtJ	ENSMUSG00225016917	lncRNA gene	Chr9:84014891-84020651 (+)
PWK/PhJ	ENSLUMG00010003163	lncRNA gene	Chr9:83518649-83524436 (+)
SPRET/EiJ	ENSMSPG00010002732	lncRNA gene	Chr9:84962861-84967846 (+)
WSB/EiJ	ENSIUOG00005003583	lncRNA gene	Chr9:83177093-83182865 (+)

Homology

• Gene Tree
  A330041J22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving A330041J22Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087466 (Evidence)
• NCBI Gene
  319556

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087466	Ensembl Gene Model | MGI Sequence Detail	5794	C57BL/6J
transcript	ENSMUST00000150367	Ensembl | MGI Sequence Detail	1825	Not Applicable
polypeptide	Q8CA76	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582