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Mir124a-1hg Gene Detail
Summary
  • Symbol
    Mir124a-1hg
  • Name
    Mir124-1 host gene (non-protein coding)
  • Synonyms
    A930011O12Rik, Rncr3
  • Feature Type
    lincRNA gene
  • IDs
    MGI:2442197
    NCBI Gene: 268755
  • Alliance
  • Transcription Start Sites
    16 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:64588115-64593961 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 33.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442197
lincRNA gene Chr14:64587331-64593961 (.)
129S1/SvImJ MGP_129S1SvImJ_G0005562
lincRNA gene Chr14:59149829-59156473 (+)
A/J MGP_AJ_G0005547
lincRNA gene Chr14:57798122-57804953 (+)
AKR/J MGP_AKRJ_G0005526
lincRNA gene Chr14:59824783-59831411 (+)
BALB/cJ MGP_BALBcJ_G0005529
lincRNA gene Chr14:57746022-57753113 (+)
C3H/HeJ MGP_C3HHeJ_G0005475
lincRNA gene Chr14:59459245-59465884 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005686
lincRNA gene Chr14:61903853-61912362 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005053
lincRNA gene Chr14:55737201-55743860 (+)
CAST/EiJ MGP_CASTEiJ_G0005418
lincRNA gene Chr14:55940326-55946967 (+)
CBA/J MGP_CBAJ_G0005465
lincRNA gene Chr14:63779034-63785669 (+)
DBA/2J MGP_DBA2J_G0005480
lincRNA gene Chr14:57462709-57469358 (+)
FVB/NJ MGP_FVBNJ_G0005506
lincRNA gene Chr14:56858414-56865225 (+)
LP/J MGP_LPJ_G0005565
lincRNA gene Chr14:60184765-60191404 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005492
lincRNA gene Chr14:62938535-62947443 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005684
lincRNA gene Chr14:58989498-58996543 (+)
PWK/PhJ MGP_PWKPhJ_G0005368
lincRNA gene Chr14:54148291-54155089 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005286
lincRNA gene Chr14:54950817-54957443 (+)
WSB/EiJ MGP_WSBEiJ_G0005468
lincRNA gene Chr14:59303870-59311728 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotypes from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a targeted mutation exhibit impaired hippocampal axogenesis and retinal cone cell survival.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 268755 NCBI Gene Model | MGI Sequence Detail 5847 C57BL/6J ±  kb
transcript NR_040709 RefSeq | MGI Sequence Detail 4054 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 97
    cDNA 97

    Microarray probesets 3
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:253402 Jiang D, et al., miR-124 promotes the neuronal differentiation of mouse inner ear neural stem cells. Int J Mol Med. 2016 Nov;38(5):1367-1376

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory