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Taf5 Gene Detail
Summary
  • Symbol
    Taf5
  • Name
    TATA-box binding protein associated factor 5
  • Synonyms
    6330528C20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442144
    NCBI Gene: 226182
  • Gene Overview
    MyGene.info: TAF5
Location & Maps
more
  • Sequence Map
    Chr19:47067748-47083479 bp, + strand
  • From NCBI annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      15732 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 39.19 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TAF5, TATA-box binding protein associated factor 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TAF5, TATA-box binding protein associated factor 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TAF2D, TAFII100, TAF(II)100, TAFII-100
  • Links
    NCBI Gene ID: 6877
    neXtProt AC: NX_Q15542

  • Chr Location
    10q24.33; chr10:103367953-103389065 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 5064
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TAF5
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 226182 NCBI Gene Model | MGI Sequence Detail 15732 C57BL/6J ±  kb
transcript NM_177342 RefSeq | MGI Sequence Detail 3258 C57BL/6  
polypeptide Q8C092 UniProt | EBI | MGI Sequence Detail 801 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    100 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 9
    Primer pair 1
    Other 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2147674
References
more
  • Summaries
    All 32
    Developmental Gene Expression 5
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:228779 Alpern D, et al., TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation. Elife. 2014;3:e03613

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory