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A230028O05Rik Gene Detail
Summary
  • Symbol
    A230028O05Rik
  • Name
    RIKEN cDNA A230028O05 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2442126
    NCBI Gene: 319487
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:24878389-24887808 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 16.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    90 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442126
 lncRNA gene Chr16:24878123-24887808 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005651
 lincRNA gene Chr16:22732419-22741835 (+)
A/J MGP_AJ_G0005638
 lincRNA gene Chr16:21657592-21667007 (+)
AKR/J MGP_AKRJ_G0005617
 lincRNA gene Chr16:22543745-22553159 (+)
BALB/cJ MGP_BALBcJ_G0005618
 lincRNA gene Chr16:21856931-21866346 (+)
C3H/HeJ MGP_C3HHeJ_G0005565
 lincRNA gene Chr16:22653764-22663167 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005776
 lincRNA gene Chr16:23253455-23262857 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005136
 lincRNA gene Chr16:22274064-22283388 (+)
CAST/EiJ MGP_CASTEiJ_G0005509
 lincRNA gene Chr16:22697681-22708352 (+)
CBA/J MGP_CBAJ_G0005555
 lincRNA gene Chr16:24209616-24219030 (+)
DBA/2J MGP_DBA2J_G0005570
 lincRNA gene Chr16:21609068-21618485 (+)
FVB/NJ MGP_FVBNJ_G0005597
 lincRNA gene Chr16:21605982-21615289 (+)
LP/J MGP_LPJ_G0005654
 lincRNA gene Chr16:22507504-22516917 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005582
 lincRNA gene Chr16:23639677-23649097 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005776
 lincRNA gene Chr16:22503362-22512783 (+)
PWK/PhJ MGP_PWKPhJ_G0005456
 lincRNA gene Chr16:21884733-21894387 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005375
 lincRNA gene Chr16:22259699-22269111 (+)
WSB/EiJ MGP_WSBEiJ_G0005559
 lincRNA gene Chr16:22463748-22473154 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 319487 NCBI Gene Model | MGI Sequence Detail 9420 C57BL/6J ±  kb
transcript NR_040374 RefSeq | MGI Sequence Detail 2793 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    Genomic 2
    cDNA 2
References
more
  • Summaries
    All 11
    Phenotypes 2
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory