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C530025M09Rik Gene Detail
Summary
  • Symbol
    C530025M09Rik
  • Name
    RIKEN cDNA C530025M09 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2442090
    NCBI Gene: 319470
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr2:149670259-149673562 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 73.80 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442090
 lncRNA gene Chr2:149670259-149673562 (-)
129S1/SvImJ MGP_129S1SvImJ_G0026624
 protein coding gene Chr2:154220537-154221226 (-)
A/J MGP_AJ_G0026589
 protein coding gene Chr2:147989204-147989893 (-)
AKR/J MGP_AKRJ_G0026562
 protein coding gene Chr2:152229018-152229707 (-)
BALB/cJ MGP_BALBcJ_G0026599
 protein coding gene Chr2:148398946-148399635 (-)
C3H/HeJ MGP_C3HHeJ_G0026342
 protein coding gene Chr2:152714394-152715083 (-)
C57BL/6NJ MGP_C57BL6NJ_G0027046
 protein coding gene Chr2:158737923-158738612 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0024422
 protein coding gene Chr2:141904189-141904877 (-)
CAST/EiJ MGP_CASTEiJ_G0025804
 protein coding gene Chr2:153053879-153054568 (-)
CBA/J MGP_CBAJ_G0026322
 protein coding gene Chr2:164512046-164512735 (-)
DBA/2J MGP_DBA2J_G0026456
 protein coding gene Chr2:147212795-147213484 (-)
FVB/NJ MGP_FVBNJ_G0026421
 protein coding gene Chr2:145701810-145702499 (-)
LP/J MGP_LPJ_G0026561
 protein coding gene Chr2:154341333-154342022 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0026440
 protein coding gene Chr2:168694212-168694901 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0027101
 protein coding gene Chr2:152228368-152229057 (-)
PWK/PhJ MGP_PWKPhJ_G0025539
 protein coding gene Chr2:146906872-146907592 (-)
SPRET/EiJ MGP_SPRETEiJ_G0025341
 protein coding gene Chr2:151317802-151318494 (-)
WSB/EiJ MGP_WSBEiJ_G0025877
 protein coding gene Chr2:153178068-153178757 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving C530025M09Rik
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
  • All Sequences
    25
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074737 Ensembl Gene Model | MGI Sequence Detail 3304 C57BL/6J ±  kb
transcript ENSMUST00000238777 Ensembl | MGI Sequence Detail 3304 Not Applicable  
polypeptide Q8C466 UniProt | EBI | MGI Sequence Detail 229 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Phenotypes 3
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory