About   Help   FAQ
Trerf1 Gene Detail
Summary
  • Symbol
    Trerf1
  • Name
    transcriptional regulating factor 1
  • Synonyms
    9430096I18Rik, Trep132, Trep-132
Location & Maps
more
  • Sequence Map
    Chr17:47140875-47361958 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      221084 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.91 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    TRERF1, transcriptional regulating factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRERF1, transcriptional regulating factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BCAR2, dJ139D8.5, HSA277276, RAPA, TReP-132, TREP132
  • Links
    NCBI Gene ID: 55809
    neXtProt AC: NX_Q96PN7
    UniProt: Q96PN7

  • Chr Location
    6p21.1; chr6:42224933-42452216 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    138
  • Tissues
    124
  • cDNA Data
    16
  • Literature Summary
    6
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
    37
  • RefSeq
    4
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000046197 VEGA Gene Model | MGI Sequence Detail 221084 C57BL/6J ±  kb
transcript OTTMUST00000120484 VEGA | MGI Sequence Detail 7045 Not Applicable  
polypeptide Q8BXJ2 UniProt | EBI | MGI Sequence Detail 1205 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    1506 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 16
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2146853
References
more
  • Summaries
    All 36
    Developmental Gene Expression 6
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
08/08/2017
MGI 6.10 		The Jackson Laboratory