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Trerf1 Gene Detail
Summary
  • Symbol
    Trerf1
  • Name
    transcriptional regulating factor 1
  • Synonyms
    9430096I18Rik, Trep132, Trep-132
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442086
    NCBI Gene: 224829
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:47451801-47672883 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 22.91 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442086
 protein coding gene Chr17:47451801-47673250 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015353
 unclassified non-coding RNA gene Chr17:48266534-48498751 (+)
A/J MGP_AJ_G0015327
 unclassified non-coding RNA gene Chr17:47079612-47301390 (+)
AKR/J MGP_AKRJ_G0015291
 unclassified non-coding RNA gene Chr17:47447275-47681259 (+)
BALB/cJ MGP_BALBcJ_G0015291
 unclassified non-coding RNA gene Chr17:46982289-47209336 (+)
C3H/HeJ MGP_C3HHeJ_G0015115
 unclassified non-coding RNA gene Chr17:48196761-48429341 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015745
 unclassified non-coding RNA gene Chr17:50323424-50568651 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013486
 unclassified non-coding RNA gene Chr17:43832317-44058278 (+)
CAST/EiJ MGP_CASTEiJ_G0014666
 unclassified non-coding RNA gene Chr17:48292580-48528099 (+)
CBA/J MGP_CBAJ_G0015094
 unclassified non-coding RNA gene Chr17:52174753-52422529 (+)
DBA/2J MGP_DBA2J_G0015189
 unclassified non-coding RNA gene Chr17:45844375-46061230 (+)
FVB/NJ MGP_FVBNJ_G0015196
 unclassified non-coding RNA gene Chr17:45478167-45703781 (+)
LP/J MGP_LPJ_G0015269
 unclassified non-coding RNA gene Chr17:48942088-49175067 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015222
 unclassified non-coding RNA gene Chr17:51656427-51899051 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015784
 unclassified non-coding RNA gene Chr17:47812915-48046164 (+)
PWK/PhJ MGP_PWKPhJ_G0014456
 unclassified non-coding RNA gene Chr17:45191546-45418128 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014243
 unclassified non-coding RNA gene Chr17:44697027-44940859 (+)
WSB/EiJ MGP_WSBEiJ_G0014773
 unclassified non-coding RNA gene Chr17:48384167-48619902 (+)



Homology
more
  • Human Ortholog
    TRERF1, transcriptional regulating factor 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRERF1, transcriptional regulating factor 1
  • Synonyms
    BCAR2, dJ139D8.5, HSA277276, RAPA, TReP-132, TREP132
  • Links
    NCBI Gene ID: 55809
    neXtProt AC: NX_Q96PN7
    UniProt: Q96PN7

  • Chr Location
    6p21.1; chr6:42224933-42452216 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    904
  • Tissues
    180
  • cDNA Data
    18
  • Literature Summary
    6
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
    49
  • RefSeq
    4
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000064043 Ensembl Gene Model | MGI Sequence Detail 221083 C57BL/6J ±  kb
transcript ENSMUST00000190080 Ensembl | MGI Sequence Detail 7044 Not Applicable  
polypeptide ENSMUSP00000159410 Ensembl | MGI Sequence Detail 1225 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 18
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2146853
References
more
  • Summaries
    All 38
    Developmental Gene Expression 6
    Gene Ontology 3
    Phenotypes 13
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
07/26/2022
MGI 6.21 		The Jackson Laboratory