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Nipa1
Gene Detail
 Symbol
Name
ID
Nipa1
non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
MGI:2442058
Synonyms 1110027G09Rik, A830014A18Rik, Spg6
Feature Type protein coding gene
Genetic Map
Chromosome 7
33.42 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:55977567-56019954 bp, - strand
From VEGA annotation of GRCm38

  42388 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:42327  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Nipa1

Human
homologs
Human Homolog NIPA1, non imprinted in Prader-Willi/Angelman syndrome 1
NCBI Gene ID 123606
neXtProt AC  NX_Q7RTP0
Human Synonyms  FSP3, SPG6
Human Chr (Location)  15q11.2; chr15:22786225-22829789 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human NIPA1
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Targeted(3)
Incidental mutations (data from APF )
Interactions
Nipa1 interacts with 217 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process ion transport, magnesium ion transport, ...
Component early endosome, endosome, ...
Function magnesium ion transmembrane transporter activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (22)    Tissues (21)   
Theiler Stages: 20, 22, 24, 26, 28
Assay TypeResults
RNA in situ 22
cDNA source data(4)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(5) cDNA(4) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000026329 (Evidence)
Ensembl Gene ModelENSMUSG00000047037 (Evidence)
Entrez Gene233280 (Evidence)
DFCITC1583621, TC1599549, TC1770147
DoTSDT.101268186, DT.101362252, DT.110979073, DT.55159760, DT.55204963, DT.91309024
NIA Mouse Gene IndexU028617, U099224
Consensus CDS ProjectCCDS21317.1
International Mouse Knockout Project StatusNipa1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026329 VEGA Gene Model | MGI Sequence Detail 42388 C57BL/6J ±  kb
transcript OTTMUST00000065116 VEGA | MGI Sequence Detail 3183 Not Applicable 
polypeptide OTTMUSP00000032412 VEGA | MGI Sequence Detail 323 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(4) UniProt(2)
Polymorphisms SNPs within 2kb(519 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008521 Magnesium transporter NIPA
Protein Ontology PR:000011217 magnesium transporter NIPA1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)
Other
accession IDs
MGI:1915904

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory