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Pld5 Gene Detail
Summary
  • Symbol
    Pld5
  • Name
    phospholipase D family, member 5
  • Synonyms
    B230365F16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442056
    NCBI Gene: 319455
  • Gene Overview
    MyGene.info: PLD5
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:175962306-176275312 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 81.90 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3709 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442056
 protein coding gene Chr1:175962301-176281512 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016843
 protein coding gene Chr1:182061612-182410043 (-)
A/J MGP_AJ_G0016822
 protein coding gene Chr1:174732707-175061428 (-)
AKR/J MGP_AKRJ_G0016788
 protein coding gene Chr1:179967111-180303184 (-)
BALB/cJ MGP_BALBcJ_G0016780
 protein coding gene Chr1:175266078-175590518 (-)
C3H/HeJ MGP_C3HHeJ_G0016605
 protein coding gene Chr1:180558010-180891866 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017245
 protein coding gene Chr1:188074788-188419583 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014950
 protein coding gene Chr1:166050055-166373974 (-)
CAST/EiJ MGP_CASTEiJ_G0016186
 protein coding gene Chr1:179933558-180263970 (-)
CBA/J MGP_CBAJ_G0016579
 protein coding gene Chr1:194909158-195272819 (-)
DBA/2J MGP_DBA2J_G0016684
 protein coding gene Chr1:173588967-173911215 (-)
FVB/NJ MGP_FVBNJ_G0016681
 protein coding gene Chr1:171707845-172027255 (-)
LP/J MGP_LPJ_G0016760
 protein coding gene Chr1:183255000-183599740 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016713
 protein coding gene Chr1:202167965-202518887 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017280
 protein coding gene Chr1:179717266-180055588 (-)
PWK/PhJ MGP_PWKPhJ_G0015973
 protein coding gene Chr1:172679950-173003784 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015750
 protein coding gene Chr1:178756670-179100539 (-)
WSB/EiJ MGP_WSBEiJ_G0016248
 protein coding gene Chr1:179923391-180253810 (-)



Homology
more
  • Human Ortholog
    PLD5, phospholipase D family member 5
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PLD5, phospholipase D family member 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PLDC
  • Links
    NCBI Gene ID: 200150
    neXtProt AC: NX_Q8N7P1
    UniProt: Q8N7P1

  • Chr Location
    1q43; chr1:242085051-242530546 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
No abnormal phenotype was observed in a high-throughput screen, nor in a pathology assessment.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    631
  • cDNA Data
    10
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000055214 Ensembl Gene Model | MGI Sequence Detail 313007 C57BL/6J ±  kb
transcript ENSMUST00000065967 Ensembl | MGI Sequence Detail 3557 Not Applicable  
polypeptide ENSMUSP00000069326 Ensembl | MGI Sequence Detail 536 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 1
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 10
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/13/2020
MGI 6.16 		The Jackson Laboratory