A730081D07Rik Gene Detail

Summary

• Symbol
  A730081D07Rik
• Name
  RIKEN cDNA A730081D07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441825
  NCBI Gene: 102633880
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:41109892-41154622 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 20.20 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441825	lncRNA gene	Chr13:41109890-41154627 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015256	unclassified non-coding RNA gene	Chr13:39429954-39478505 (-)
A/J	MGP_AJ_G0015230	unclassified non-coding RNA gene	Chr13:38115589-38158814 (-)
AKR/J	MGP_AKRJ_G0015193	unclassified non-coding RNA gene	Chr13:39153459-39198515 (-)
BALB/cJ	MGP_BALBcJ_G0015192	unclassified non-coding RNA gene	Chr13:38304432-38348112 (-)
C3H/HeJ	MGP_C3HHeJ_G0015016	unclassified non-coding RNA gene	Chr13:39033930-39080428 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015649	unclassified non-coding RNA gene	Chr13:40679544-40730387 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013391	unclassified non-coding RNA gene	Chr13:36255070-36299384 (-)
CAST/EiJ	MGP_CASTEiJ_G0014569	unclassified non-coding RNA gene	Chr13:38809792-38854742 (-)
CBA/J	MGP_CBAJ_G0014995	unclassified non-coding RNA gene	Chr13:42424947-42478811 (-)
DBA/2J	MGP_DBA2J_G0015088	unclassified non-coding RNA gene	Chr13:37692685-37735782 (-)
FVB/NJ	MGP_FVBNJ_G0015099	unclassified non-coding RNA gene	Chr13:37183526-37231829 (-)
LP/J	MGP_LPJ_G0015169	unclassified non-coding RNA gene	Chr13:39666749-39717692 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015126	unclassified non-coding RNA gene	Chr13:42405777-42452805 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015688	unclassified non-coding RNA gene	Chr13:38799838-38847857 (-)
PWK/PhJ	MGP_PWKPhJ_G0014361	unclassified non-coding RNA gene	Chr13:37754224-37799344 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014148	unclassified non-coding RNA gene	Chr13:37416282-37457061 (-)
WSB/EiJ	MGP_WSBEiJ_G0014672	unclassified non-coding RNA gene	Chr13:39105839-39151907 (-)

Homology

• Gene Tree
  A730081D07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  10
• Chemically induced (other)
  1
• Gene trapped
  9
• Genomic Mutations
  1 involving A730081D07Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086693 (Evidence)
• NCBI Gene
  102633880

Representative Sequences			Length	Strain/Species
genomic	102633880	NCBI Gene Model | MGI Sequence Detail	44731	C57BL/6J
transcript	NR_155347	RefSeq | MGI Sequence Detail	1797	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A730081D07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122173	Chr13:41154608-41154627 (-)	4 bp
Tssr122172	Chr13:41154390-41154416 (-)	219 bp
Tssr122171	Chr13:41138269-41138273 (-)	16,351 bp