Lgr6 MGI Mouse Gene Detail - MGI:2441805 - leucine-rich repeat-containing G protein-coupled receptor 6

Lgr6 Gene Detail

Symbol

Lgr6
Name

leucine-rich repeat-containing G protein-coupled receptor 6
Synonyms

A530037C04Rik

Feature Type

protein coding gene
IDs

MGI:2441805
NCBI Gene: 329252
Gene Overview

MyGene.info: LGR6
Alliance

gene page

Sequence Map

Chr1:134983301-135105276 bp, - strand
From VEGA annotation of GRCm38

Mouse Genome Browser
Download
Sequence

121976 bp ± kb flank
Genome Browsers

VEGA | Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 58.24 cM
Mapping Data

3 experiments

Human Ortholog

LGR6, leucine rich repeat containing G protein-coupled receptor 6

Vertebrate Orthologs

9

Human Ortholog

LGR6, leucine rich repeat containing G protein-coupled receptor 6
Orthology source: HomoloGene, HGNC
Synonyms

GPCR, VTS20631
Links

HGNC:19719

NCBI Gene ID: 59352

neXtProt AC: NX_Q9HBX8

UniProt: Q9HBX8
Chr Location

1q32.1; chr1:202193990-202319761 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 49680
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 macaque, rhesus
HCOP

human homology predictions: LGR6
Protein SuperFamily

leucine-rich repeat-containing G protein-coupled receptor 4/5/6
Gene Tree

Lgr6

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Phenotype Summary

1 phenotype from 2 alleles in 1 genetic background
18 phenotype references

All Mutations and Alleles

7
Chemically induced (other)

2
Radiation induced

1
Targeted

4
Genomic Mutations

3 involving Lgr6
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

49 strains or lines available

Mice homozygous for a reporter/null allele are viable and fertile with no apparent abnormal phenotype. Similarly, mice homozygous for a knock-in allele are healthy and fertile.

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All GO Annotations

17
GO References

4

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	receptor binding	RNA binding	transcription	transferase	transporter

Biological Process

nucleic acid-templated transcription	carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

15
Tissues

15
cDNA Data

18
Literature Summary

6

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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Lgr6 interacts with 106 markers (Mir7b, Mir9-1, Mir9-2, ...) View All

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All Sequences

32
RefSeq

8
UniProt

2
CCDS

CCDS15314.1
UniGene

279594

			Length	Strain/Species	Flank
genomic	OTTMUSG00000026806	VEGA Gene Model \| MGI Sequence Detail	121976	C57BL/6J	± kb
transcript	OTTMUST00000066294	VEGA \| MGI Sequence Detail	6675	Not Applicable
polypeptide	OTTMUSP00000033204	VEGA \| MGI Sequence Detail	967	Not Applicable

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SNPs within 2kb

1465 from dbSNP Build 142

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UniProt

2 Sequences
Protein Ontology

PR:000001593 leucine-rich repeat-containing G-protein coupled receptor 6

(term hierarchy)
InterPro Domains

IPR002131 Glycoprotein hormone receptor family

IPR000276 G protein-coupled receptor, rhodopsin-like

IPR001611 Leucine-rich repeat

IPR032675 Leucine-rich repeat domain superfamily

IPR000372 Leucine-rich repeat N-terminal domain

IPR003591 Leucine-rich repeat, typical subtype

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All nucleic 21

Genomic 1

cDNA 18

Primer pair 1

Other 1

Microarray probesets 2

Summaries

All 48

Developmental Gene Expression 6

Gene Ontology 4

Phenotypes 18
Earliest

J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
Latest

J:252284 Lee JH, et al., Anatomically and Functionally Distinct Lung Mesenchymal Populations Marked by Lgr5 and Lgr6. Cell. 2017 Sep 07;170(6):1149-1163.e12

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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