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Rab42
Gene Detail
Symbol

Name
ID
Rab42
RAB42, member RAS oncogene family
MGI:2441753
Synonyms
9530096D07Rik, Rab42-ps
Feature Type
protein coding gene
Genetic Map
Chromosome 4
65.14 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr4:132302197-132303385 bp, - strand
From VEGA annotation of GRCm38

  1189 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:85237  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab42

Human
homologs
Human Homolog RAB42, RAB42, member RAS oncogene family
NCBI Gene ID 115273
neXtProt AC  NX_Q8N4Z0
Human Chr (Location)  1p35.3; chr1:28592200-28594586 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from APF )
Interactions
Rab42 interacts with 7 markers (Mir370, Mir652, Mir709, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process GTP catabolic process, intracellular protein transport, ...
Component Golgi apparatus
Function GDP binding, GTPase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (8)    Tissues (2)    Images (7)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 8
cDNA source data(8)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(8) cDNA(8)
Microarray probesets(1)
Other database
links
VEGA Gene ModelOTTMUSG00000011109 (Evidence)
Ensembl Gene ModelENSMUSG00000089687 (Evidence)
Entrez Gene242681 (Evidence)
UniGene331927
DFCITC1610601
DoTSDT.91443621
NIA Mouse Gene IndexU087326
Consensus CDS ProjectCCDS38898.1
International Mouse Knockout Project StatusRab42
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011109 VEGA Gene Model | MGI Sequence Detail 1189 C57BL/6J ±  kb
transcript OTTMUST00000026007 VEGA | MGI Sequence Detail 761 Not Applicable 
polypeptide OTTMUSP00000051044 VEGA | MGI Sequence Detail 215 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(64 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(24)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory