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Trim12c
Gene Detail
Symbol

Name
ID
Trim12c
tripartite motif-containing 12C
MGI:4821183
Synonyms
9230105E10Rik, Trim12-2
Feature Type
protein coding gene
Genetic Map
Chromosome 7
55.69 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:104338754-104353362 bp, - strand
From VEGA annotation of GRCm38

  14609 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:75345  Vertebrate Homology Class
1 human; 2 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 2 cattle

HCOP human homology predictions: TRIM5
Protein SuperFamily: tripartite motif-containing protein
Gene Tree: Trim12c

Human
homologs
TRIM5, tripartite motif containing 5
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 85363
neXtProt AC: NX_Q9C035

Human Synonyms: RNF88, TRIM5alpha

Human Chr (Location): 11p15; chr11:5590982-5685109 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF )
Interactions
Trim12c interacts with 279 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (23)    Tissues (14)    Images (2)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 23
cDNA source data(32)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(32) cDNA(32)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000019193 (Evidence)
Ensembl Gene Model ENSMUSG00000057143 (Evidence)
Entrez Gene 319236 (Evidence)
UniGene 425502
Consensus CDS Project CCDS52344.1
International Mouse Phenotyping Consortium Status Trim12c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019193 VEGA Gene Model | MGI Sequence Detail 14609 C57BL/6J ±  kb
transcript OTTMUST00000045997 VEGA | MGI Sequence Detail 3740 Not Applicable 
polypeptide OTTMUSP00000020743 VEGA | MGI Sequence Detail 497 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(4) UniProt(5)
Polymorphisms
SNPs within 2kb(193 from dbSNP Build 137)    SNPs within 2kb including multiple locations(253)
Protein-related
information
ResourceIDDescription
InterPro IPR001870 B30.2/SPRY domain
InterPro IPR003879 Butyrophylin-like
InterPro IPR013320 Concanavalin A-like lectin/glucanase, subgroup
InterPro IPR003877 SPla/RYanodine receptor SPRY
InterPro IPR000315 Zinc finger, B-box
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:162981 Tareen SU, et al., An expanded clade of rodent Trim5 genes. Virology. 2009 Mar 15;385(2):473-83
All references(16)
Other
accession IDs
MGI:2441735

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory