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BC005537 Gene Detail
Summary
  • Symbol
    BC005537
  • Name
    cDNA sequence BC005537
  • Synonyms
    8030460C05Rik, MGC:7474
  • Feature Type
    protein coding gene
  • IDs
    MGI:2441726
    NCBI Gene: 79555
  • Alliance
  • Transcription Start Sites
    20 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:24801657-24812899 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 10.68 cM, cytoband A3.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    38 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2441726
protein coding gene Chr13:24801657-24816197 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020380
protein coding gene Chr13:22285501-22297857 (+)
A/J MGP_AJ_G0020329
protein coding gene Chr13:21886503-21898976 (+)
AKR/J MGP_AKRJ_G0020309
protein coding gene Chr13:22127494-22139851 (+)
BALB/cJ MGP_BALBcJ_G0020327
protein coding gene Chr13:21863534-21875890 (+)
C3H/HeJ MGP_C3HHeJ_G0020131
protein coding gene Chr13:22207050-22219406 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020764
protein coding gene Chr13:23093284-23105640 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018352
protein coding gene Chr13:20605497-20618663 (+)
CAST/EiJ MGP_CASTEiJ_G0019648
protein coding gene Chr13:21914468-21926758 (+)
CBA/J MGP_CBAJ_G0020085
protein coding gene Chr13:23979776-23992062 (+)
DBA/2J MGP_DBA2J_G0020211
protein coding gene Chr13:21381205-21393984 (+)
FVB/NJ MGP_FVBNJ_G0020195
protein coding gene Chr13:21027542-21039898 (+)
LP/J MGP_LPJ_G0020284
protein coding gene Chr13:22598017-22610373 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020222
protein coding gene Chr13:24229941-24242293 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020806
protein coding gene Chr13:21973026-21985382 (+)
PWK/PhJ MGP_PWKPhJ_G0019402
protein coding gene Chr13:21403904-21416403 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019218
protein coding gene Chr13:20799046-20811520 (+)
WSB/EiJ MGP_WSBEiJ_G0019708
protein coding gene Chr13:22138057-22150381 (+)



Homology
more
  • Human Ortholog
    C6orf62, chromosome 6 open reading frame 62
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C6orf62, chromosome 6 open reading frame 62
    Orthology source: HomoloGene, HGNC
  • Synonyms
    dJ30M3.2, Nbla00237, XTP12
  • Links
    NCBI Gene ID: 81688
    neXtProt AC: NX_Q9GZU0
    UniProt: Q9GZU0

  • Chr Location
    6p22.3; chr6:24704758-24720836 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 79555 NCBI Gene Model | MGI Sequence Detail 11243 C57BL/6J ±  kb
transcript NM_024473 RefSeq | MGI Sequence Detail 2551 C57BL/6  
polypeptide Q99LU8 UniProt | EBI | MGI Sequence Detail 229 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR027903 Protein of unknown function DUF4566
Molecular
Reagents
less
  • All nucleic 17
    Genomic 1
    cDNA 16

    Microarray probesets 5
Other
Accession IDs
less
MGI:2135251, MGI:2145495
References
more
  • Summaries
    All 40
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 14
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory